miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 3' -59.3 NC_006151.1 + 119049 0.66 0.814145
Target:  5'- aCGgCGGCG-CCG-CGgCCgCCUCCGCg -3'
miRNA:   3'- gGCaGCUGUaGGCaGCgGG-GGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 49378 0.66 0.814145
Target:  5'- aCCuUCaGcCAUCCGUCGCCgCUggcCCGCa -3'
miRNA:   3'- -GGcAG-CuGUAGGCAGCGGgGGa--GGUG- -5'
29618 3' -59.3 NC_006151.1 + 37170 0.66 0.811615
Target:  5'- uCCGcCGGCGcccgCCGcggccccgcggcccUCgGCCUCCUCCGCc -3'
miRNA:   3'- -GGCaGCUGUa---GGC--------------AG-CGGGGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 25404 0.66 0.80566
Target:  5'- aCCG-CGACGggggcgCCGcCGCCCCa--CGCg -3'
miRNA:   3'- -GGCaGCUGUa-----GGCaGCGGGGgagGUG- -5'
29618 3' -59.3 NC_006151.1 + 23126 0.66 0.80566
Target:  5'- cCCG-CGccccuCcUCCGUCGCCgggCCCUCgGCg -3'
miRNA:   3'- -GGCaGCu----GuAGGCAGCGG---GGGAGgUG- -5'
29618 3' -59.3 NC_006151.1 + 65970 0.66 0.804803
Target:  5'- gUCGUCGAgccgGUCC-UCGCCggccgcgagcgcgUCCUCCGCg -3'
miRNA:   3'- -GGCAGCUg---UAGGcAGCGG-------------GGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 58523 0.66 0.797029
Target:  5'- cUCGUCcuCGUCCuccUCGCCgCCCUCCcCg -3'
miRNA:   3'- -GGCAGcuGUAGGc--AGCGG-GGGAGGuG- -5'
29618 3' -59.3 NC_006151.1 + 59372 0.66 0.797029
Target:  5'- gCCGcgCGGCcgUCGUCGCgUCCagCACg -3'
miRNA:   3'- -GGCa-GCUGuaGGCAGCGgGGGagGUG- -5'
29618 3' -59.3 NC_006151.1 + 109660 0.66 0.797029
Target:  5'- gCUGcCGcCA-CCGcCGCCCCCUcagCCGCu -3'
miRNA:   3'- -GGCaGCuGUaGGCaGCGGGGGA---GGUG- -5'
29618 3' -59.3 NC_006151.1 + 97913 0.66 0.797029
Target:  5'- gCG-CGGaugCCGUCGCCgCCgaggCCGCg -3'
miRNA:   3'- gGCaGCUguaGGCAGCGGgGGa---GGUG- -5'
29618 3' -59.3 NC_006151.1 + 107499 0.66 0.797029
Target:  5'- cCCGUCG-CcgCCgGUCGaCCCgC-CCACg -3'
miRNA:   3'- -GGCAGCuGuaGG-CAGC-GGGgGaGGUG- -5'
29618 3' -59.3 NC_006151.1 + 40220 0.66 0.791783
Target:  5'- aCGcCGGCAaccccuaccugcugcUCCGcugagcggggCGCCCCCUCgGCc -3'
miRNA:   3'- gGCaGCUGU---------------AGGCa---------GCGGGGGAGgUG- -5'
29618 3' -59.3 NC_006151.1 + 37897 0.66 0.791783
Target:  5'- aCCGUCGaggcccucugcgcccGCGUCC--CGCCgCCUUCGCc -3'
miRNA:   3'- -GGCAGC---------------UGUAGGcaGCGGgGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 90942 0.66 0.788258
Target:  5'- gCGUCauGGCGaagggcUCCGUCGCgCCgaCCGCg -3'
miRNA:   3'- gGCAG--CUGU------AGGCAGCGgGGgaGGUG- -5'
29618 3' -59.3 NC_006151.1 + 101973 0.66 0.788258
Target:  5'- aCgGUCGGCGggcggCCGUCGCgCaagUUCCGCc -3'
miRNA:   3'- -GgCAGCUGUa----GGCAGCGgGg--GAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 60615 0.66 0.788258
Target:  5'- gCCGUCGucgccGCcgCCGUCgucggggcgggGCUCCCggcCCGCg -3'
miRNA:   3'- -GGCAGC-----UGuaGGCAG-----------CGGGGGa--GGUG- -5'
29618 3' -59.3 NC_006151.1 + 112415 0.66 0.779356
Target:  5'- gCCGcgcgcagaUCGACcgCCG-CGCCgCCgccgCCGCg -3'
miRNA:   3'- -GGC--------AGCUGuaGGCaGCGGgGGa---GGUG- -5'
29618 3' -59.3 NC_006151.1 + 48827 0.66 0.779356
Target:  5'- gCCGcCGAguUCgaCGUgGCCCCCUCguggCGCg -3'
miRNA:   3'- -GGCaGCUguAG--GCAgCGGGGGAG----GUG- -5'
29618 3' -59.3 NC_006151.1 + 74151 0.66 0.779356
Target:  5'- gCCGggGGuCGUCCGU-GCCCaCCUCCuCg -3'
miRNA:   3'- -GGCagCU-GUAGGCAgCGGG-GGAGGuG- -5'
29618 3' -59.3 NC_006151.1 + 65842 0.66 0.779356
Target:  5'- gCG-CGGC--CCGgcucaCGCCUCCUCCGCu -3'
miRNA:   3'- gGCaGCUGuaGGCa----GCGGGGGAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.