miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 5' -51.4 NC_006151.1 + 124067 0.66 0.99306
Target:  5'- gCGCGGACGGccguGCG-CGCgg-CCGCGa -3'
miRNA:   3'- gGUGUUUGCUu---CGCaGCGacaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 52764 0.66 0.99306
Target:  5'- cUCGCA-GCGcAGCGcCGCggcGUCCugGu -3'
miRNA:   3'- -GGUGUuUGCuUCGCaGCGa--CAGGugC- -5'
29618 5' -51.4 NC_006151.1 + 94910 0.66 0.99306
Target:  5'- gCCACAAACugcGCGUUGUacacgccgUGcUCCGCGa -3'
miRNA:   3'- -GGUGUUUGcuuCGCAGCG--------AC-AGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 115038 0.66 0.99306
Target:  5'- gCgGCAGGCGc-GUGUUGCUGUaCGCGu -3'
miRNA:   3'- -GgUGUUUGCuuCGCAGCGACAgGUGC- -5'
29618 5' -51.4 NC_006151.1 + 26364 0.66 0.99306
Target:  5'- gCCGCGu-CGggGCG-CGC-GUCCcccgGCGg -3'
miRNA:   3'- -GGUGUuuGCuuCGCaGCGaCAGG----UGC- -5'
29618 5' -51.4 NC_006151.1 + 53961 0.66 0.99306
Target:  5'- aCCACGccAGCGGcGGCGgCGCc-UCCGCGg -3'
miRNA:   3'- -GGUGU--UUGCU-UCGCaGCGacAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 71685 0.66 0.99306
Target:  5'- gCCGCGugcCGAGcGUGUCGCccagCCGCGa -3'
miRNA:   3'- -GGUGUuu-GCUU-CGCAGCGaca-GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 98355 0.66 0.99306
Target:  5'- cCCGCGGGCGugcgcgggcucuGGGCGcgcgCGCUGcgCCugGc -3'
miRNA:   3'- -GGUGUUUGC------------UUCGCa---GCGACa-GGugC- -5'
29618 5' -51.4 NC_006151.1 + 89163 0.66 0.992022
Target:  5'- gCCuCGGGCGAGGCGggCGCggggGUCgGgGg -3'
miRNA:   3'- -GGuGUUUGCUUCGCa-GCGa---CAGgUgC- -5'
29618 5' -51.4 NC_006151.1 + 46540 0.66 0.992022
Target:  5'- uCCGCGGACGAccagaggccGGCGcccaggCGCUccCCGCGc -3'
miRNA:   3'- -GGUGUUUGCU---------UCGCa-----GCGAcaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 69002 0.66 0.992022
Target:  5'- aCGCAGGCGuuGCGgaagCGCUccagcagcaccaGcUCCGCGg -3'
miRNA:   3'- gGUGUUUGCuuCGCa---GCGA------------C-AGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 75389 0.66 0.992022
Target:  5'- gCACGGcGCGggGCGggugcgugCGCggGUCCGgGa -3'
miRNA:   3'- gGUGUU-UGCuuCGCa-------GCGa-CAGGUgC- -5'
29618 5' -51.4 NC_006151.1 + 88329 0.66 0.992022
Target:  5'- gCGCu-GCGAGGCcaCGCUGU-CGCGg -3'
miRNA:   3'- gGUGuuUGCUUCGcaGCGACAgGUGC- -5'
29618 5' -51.4 NC_006151.1 + 102013 0.66 0.992022
Target:  5'- cCCGCGAGCccauGGGCuUCGCcGUCCGgGa -3'
miRNA:   3'- -GGUGUUUGc---UUCGcAGCGaCAGGUgC- -5'
29618 5' -51.4 NC_006151.1 + 122655 0.66 0.992022
Target:  5'- aCCugGAGCGGcgcgAGCGcCGCgccgagGUgCGCGc -3'
miRNA:   3'- -GGugUUUGCU----UCGCaGCGa-----CAgGUGC- -5'
29618 5' -51.4 NC_006151.1 + 127329 0.66 0.992022
Target:  5'- uCCGCGGGCGggG-GU-GCUGguaCACGu -3'
miRNA:   3'- -GGUGUUUGCuuCgCAgCGACag-GUGC- -5'
29618 5' -51.4 NC_006151.1 + 61298 0.66 0.990865
Target:  5'- -aGCucGACGGGcGCGUCGCgcugcagGUCCAgGg -3'
miRNA:   3'- ggUGu-UUGCUU-CGCAGCGa------CAGGUgC- -5'
29618 5' -51.4 NC_006151.1 + 129117 0.66 0.990865
Target:  5'- gCCAgGGcCGAGGCG-CGCUGggcgCCAa- -3'
miRNA:   3'- -GGUgUUuGCUUCGCaGCGACa---GGUgc -5'
29618 5' -51.4 NC_006151.1 + 103632 0.66 0.990865
Target:  5'- aCGCGGugGcGGCGgCGCUGgcggaCGCGg -3'
miRNA:   3'- gGUGUUugCuUCGCaGCGACag---GUGC- -5'
29618 5' -51.4 NC_006151.1 + 64494 0.66 0.990865
Target:  5'- cCCGCGGGCGcGGGCGgcgggCGCgcgCCGCc -3'
miRNA:   3'- -GGUGUUUGC-UUCGCa----GCGacaGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.