miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 5' -51.4 NC_006151.1 + 53961 0.66 0.99306
Target:  5'- aCCACGccAGCGGcGGCGgCGCc-UCCGCGg -3'
miRNA:   3'- -GGUGU--UUGCU-UCGCaGCGacAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 56927 0.67 0.984865
Target:  5'- aCACAAauggcgGCGggGCGUCGCcGg-CGCu -3'
miRNA:   3'- gGUGUU------UGCuuCGCAGCGaCagGUGc -5'
29618 5' -51.4 NC_006151.1 + 57231 0.72 0.86475
Target:  5'- gUCGCAGGCGgcGCG-CGCggccucggcGUCCGCGc -3'
miRNA:   3'- -GGUGUUUGCuuCGCaGCGa--------CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 57489 0.7 0.929963
Target:  5'- cUCGCAGGCGAcGCGcacgCGCUcggCCGCGg -3'
miRNA:   3'- -GGUGUUUGCUuCGCa---GCGAca-GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 58453 0.83 0.31916
Target:  5'- gCGCGcGCGcGGCGUCGCgGUCCACGa -3'
miRNA:   3'- gGUGUuUGCuUCGCAGCGaCAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 58928 0.7 0.924543
Target:  5'- gCCGCGGcCGucauAGCGcCGCaaaGUCCACGg -3'
miRNA:   3'- -GGUGUUuGCu---UCGCaGCGa--CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 59146 0.68 0.976249
Target:  5'- cCCGCGGGCGGguccaggccGGCGUCGCgcagcagCGCGg -3'
miRNA:   3'- -GGUGUUUGCU---------UCGCAGCGacag---GUGC- -5'
29618 5' -51.4 NC_006151.1 + 59288 0.73 0.832289
Target:  5'- aCACGAGCGcGGCGUgGC-GcCCGCGg -3'
miRNA:   3'- gGUGUUUGCuUCGCAgCGaCaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 59785 0.75 0.729066
Target:  5'- gCCACGAgguacuucuccACGAAGguggccaccuCGcCGCUGUCCGCGa -3'
miRNA:   3'- -GGUGUU-----------UGCUUC----------GCaGCGACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 60096 0.68 0.970793
Target:  5'- gCCGCGAACGccGGGCGgcagcggCGCUGgaaCUGCGc -3'
miRNA:   3'- -GGUGUUUGC--UUCGCa------GCGACa--GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 61298 0.66 0.990865
Target:  5'- -aGCucGACGGGcGCGUCGCgcugcagGUCCAgGg -3'
miRNA:   3'- ggUGu-UUGCUU-CGCAGCGa------CAGGUgC- -5'
29618 5' -51.4 NC_006151.1 + 64494 0.66 0.990865
Target:  5'- cCCGCGGGCGcGGGCGgcgggCGCgcgCCGCc -3'
miRNA:   3'- -GGUGUUUGC-UUCGCa----GCGacaGGUGc -5'
29618 5' -51.4 NC_006151.1 + 65171 0.76 0.657045
Target:  5'- gCgGCGcGCGAGGCGgaagCGCggGUCCGCGa -3'
miRNA:   3'- -GgUGUuUGCUUCGCa---GCGa-CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 65400 0.66 0.990865
Target:  5'- gCCGUGAGCGAgcGGCGguaCGC-GUCCAUGu -3'
miRNA:   3'- -GGUGUUUGCU--UCGCa--GCGaCAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 65502 0.7 0.935134
Target:  5'- aCGCcGGCGGAGCG-CGCcuccUCCGCGg -3'
miRNA:   3'- gGUGuUUGCUUCGCaGCGac--AGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 67273 0.73 0.823679
Target:  5'- uCCACGcGCGccuGCGcCGCUGgugCCGCGa -3'
miRNA:   3'- -GGUGUuUGCuu-CGCaGCGACa--GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 67529 0.7 0.935134
Target:  5'- gCCAcCAGGCGccagccGGCGUCGUUGaCCACc -3'
miRNA:   3'- -GGU-GUUUGCu-----UCGCAGCGACaGGUGc -5'
29618 5' -51.4 NC_006151.1 + 67744 0.67 0.97797
Target:  5'- gCACGgcgcGGCGGccccgucggggugcGGCGUCGCguugagggcGUCCACGu -3'
miRNA:   3'- gGUGU----UUGCU--------------UCGCAGCGa--------CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 68170 0.67 0.986588
Target:  5'- gCCACcAGCGcguaggcGGCGUCGUUGagcaggaCCACGa -3'
miRNA:   3'- -GGUGuUUGCu------UCGCAGCGACa------GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 69002 0.66 0.992022
Target:  5'- aCGCAGGCGuuGCGgaagCGCUccagcagcaccaGcUCCGCGg -3'
miRNA:   3'- gGUGUUUGCuuCGCa---GCGA------------C-AGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.