Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29621 | 3' | -59.2 | NC_006151.1 | + | 127098 | 0.78 | 0.189044 |
Target: 5'- cCCuccgUCCCuCUCCCCUCCGUcCCGCg -3' miRNA: 3'- uGGuaa-AGGG-GAGGGGAGGCGaGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 32019 | 0.77 | 0.193769 |
Target: 5'- uCUGUgUCCCCUcgccCCCCUCCGCgUCCGCa -3' miRNA: 3'- uGGUAaAGGGGA----GGGGAGGCG-AGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 108808 | 0.75 | 0.258896 |
Target: 5'- gGCgCAg--CCCCUUCCCUCCGCuguUCUACg -3' miRNA: 3'- -UG-GUaaaGGGGAGGGGAGGCG---AGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 11385 | 0.75 | 0.265062 |
Target: 5'- cGCCucUUCCCCcCUCCUCCGCcgCCGCc -3' miRNA: 3'- -UGGuaAAGGGGaGGGGAGGCGa-GGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 12460 | 0.74 | 0.29092 |
Target: 5'- cACCAccaCCCCUCCCCUCCcuCUCCu- -3' miRNA: 3'- -UGGUaaaGGGGAGGGGAGGc-GAGGug -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 31901 | 0.74 | 0.318712 |
Target: 5'- cCCucccUCCCCUCCCCUCCcGCgUCCuGCg -3' miRNA: 3'- uGGuaa-AGGGGAGGGGAGG-CG-AGG-UG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 11413 | 0.74 | 0.311581 |
Target: 5'- cGCCAguccUCCUcgCUCCUCUCCGC-CCACg -3' miRNA: 3'- -UGGUaa--AGGG--GAGGGGAGGCGaGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 40381 | 0.73 | 0.348452 |
Target: 5'- cCCGUccccgUCCuCCUCCuCCUCUGCgUCCGCg -3' miRNA: 3'- uGGUAa----AGG-GGAGG-GGAGGCG-AGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 25436 | 0.73 | 0.372024 |
Target: 5'- cCCGUcaUCCCUCCCCgcggCCGC-CCGCc -3' miRNA: 3'- uGGUAaaGGGGAGGGGa---GGCGaGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 93037 | 0.73 | 0.348452 |
Target: 5'- uCCGUcgUCgCCUCCCCcCCGCgggCCACu -3' miRNA: 3'- uGGUAa-AGgGGAGGGGaGGCGa--GGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 71442 | 0.72 | 0.388332 |
Target: 5'- gGCCAcccgcccCCCCUCCuCCcUCGCUCCGCc -3' miRNA: 3'- -UGGUaaa----GGGGAGG-GGaGGCGAGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 26015 | 0.72 | 0.380119 |
Target: 5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3' miRNA: 3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 25911 | 0.72 | 0.380119 |
Target: 5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3' miRNA: 3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 25876 | 0.72 | 0.380119 |
Target: 5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3' miRNA: 3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 26085 | 0.72 | 0.380119 |
Target: 5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3' miRNA: 3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 25771 | 0.72 | 0.380119 |
Target: 5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3' miRNA: 3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 25806 | 0.72 | 0.380119 |
Target: 5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3' miRNA: 3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 26050 | 0.72 | 0.380119 |
Target: 5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3' miRNA: 3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 26120 | 0.72 | 0.380119 |
Target: 5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3' miRNA: 3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 9660 | 0.72 | 0.380119 |
Target: 5'- cGCCccgcgcUUCCCCUucccgcuucCCCCUCCGCccggCCGCg -3' miRNA: 3'- -UGGua----AAGGGGA---------GGGGAGGCGa---GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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