miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29622 3' -58.3 NC_006151.1 + 142535 0.67 0.757318
Target:  5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3'
miRNA:   3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5'
29622 3' -58.3 NC_006151.1 + 142483 0.67 0.757318
Target:  5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3'
miRNA:   3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5'
29622 3' -58.3 NC_006151.1 + 142431 0.67 0.757318
Target:  5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3'
miRNA:   3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5'
29622 3' -58.3 NC_006151.1 + 142379 0.67 0.757318
Target:  5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3'
miRNA:   3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5'
29622 3' -58.3 NC_006151.1 + 135132 0.66 0.774183
Target:  5'- gGCUGGGc--GGGGACGGGcagacccagcccGGCGGGc -3'
miRNA:   3'- -CGACCCucaCCCCUGCCUu-----------CUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 130924 0.67 0.747794
Target:  5'- gGCcGGGcccGcGGGGGCGGggGcgGCGGGGg -3'
miRNA:   3'- -CGaCCCu--CaCCCCUGCCuuC--UGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 127923 0.78 0.21544
Target:  5'- --gGGGAGcGGGGGCGGcGAGACGGGc -3'
miRNA:   3'- cgaCCCUCaCCCCUGCC-UUCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 121554 0.66 0.811877
Target:  5'- --gGGGAGgaggaGGGGAa-GggGACGGGc -3'
miRNA:   3'- cgaCCCUCa----CCCCUgcCuuCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 112033 0.72 0.470951
Target:  5'- gGC-GGGAGcUGGGGcCGGcGGGCGGGc -3'
miRNA:   3'- -CGaCCCUC-ACCCCuGCCuUCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 110633 0.66 0.811877
Target:  5'- cUUGGGGGgacuuggGGGGACuugGGggGACuuGGGGg -3'
miRNA:   3'- cGACCCUCa------CCCCUG---CCuuCUG--CCUU- -5'
29622 3' -58.3 NC_006151.1 + 110593 0.66 0.811877
Target:  5'- cUUGGGGGgacuuggGGGGACuugGGggGACuuGGGGg -3'
miRNA:   3'- cGACCCUCa------CCCCUG---CCuuCUG--CCUU- -5'
29622 3' -58.3 NC_006151.1 + 110555 0.67 0.728455
Target:  5'- cUUGGGGGgauugGGGGACuugGGggGACuuGGGGg -3'
miRNA:   3'- cGACCCUCa----CCCCUG---CCuuCUG--CCUU- -5'
29622 3' -58.3 NC_006151.1 + 110498 0.67 0.728455
Target:  5'- cUUGGGGGgauugGGGGACuugGGggGACuuGGGGg -3'
miRNA:   3'- cGACCCUCa----CCCCUG---CCuuCUG--CCUU- -5'
29622 3' -58.3 NC_006151.1 + 110043 0.68 0.668761
Target:  5'- --cGaGGAG-GGGGAC-GAGGACGGGGa -3'
miRNA:   3'- cgaC-CCUCaCCCCUGcCUUCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 96710 0.66 0.811877
Target:  5'- cGCcGGGGGcggcGGcGGACGaGGAGGCGGc- -3'
miRNA:   3'- -CGaCCCUCa---CC-CCUGC-CUUCUGCCuu -5'
29622 3' -58.3 NC_006151.1 + 89180 0.75 0.328667
Target:  5'- cGC-GGGGGUcGGGGGCGGAgaGGGCGaGAGu -3'
miRNA:   3'- -CGaCCCUCA-CCCCUGCCU--UCUGC-CUU- -5'
29622 3' -58.3 NC_006151.1 + 87782 0.68 0.678833
Target:  5'- gGCgGGagaGAGUGuGGGugGGAgagGGugGGAGa -3'
miRNA:   3'- -CGaCC---CUCAC-CCCugCCU---UCugCCUU- -5'
29622 3' -58.3 NC_006151.1 + 80211 0.66 0.776033
Target:  5'- cGgUGGGAGagagGGcGGugGGAgagagggcGGugGGAGa -3'
miRNA:   3'- -CgACCCUCa---CC-CCugCCU--------UCugCCUU- -5'
29622 3' -58.3 NC_006151.1 + 80166 0.66 0.776033
Target:  5'- cGgUGGGAGagagGGcGGugGGAgagagggcGGugGGAGa -3'
miRNA:   3'- -CgACCCUCa---CC-CCugCCU--------UCugCCUU- -5'
29622 3' -58.3 NC_006151.1 + 80121 0.66 0.776033
Target:  5'- cGgUGGGAGagagGGcGGugGGAgagagggcGGugGGAGa -3'
miRNA:   3'- -CgACCCUCa---CC-CCugCCU--------UCugCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.