miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29622 5' -61.7 NC_006151.1 + 133007 0.65 0.640884
Target:  5'- -cUUCCGCCCggggguGCUCUCgUccaggacggcguugGCCGCCUc -3'
miRNA:   3'- acAAGGCGGG------CGAGAGgG--------------UGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 43977 0.66 0.63388
Target:  5'- ---cCCGCCUGCUCUaucaCCCACCcacCCa- -3'
miRNA:   3'- acaaGGCGGGCGAGA----GGGUGGc--GGaa -5'
29622 5' -61.7 NC_006151.1 + 126726 0.66 0.63388
Target:  5'- --cUCCGUCC-CUCUCCCcuCCGuCCUc -3'
miRNA:   3'- acaAGGCGGGcGAGAGGGu-GGC-GGAa -5'
29622 5' -61.7 NC_006151.1 + 50890 0.66 0.63388
Target:  5'- gGggCCGgCCGCg--CCCcCCGCCUc -3'
miRNA:   3'- aCaaGGCgGGCGagaGGGuGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 25739 0.66 0.63388
Target:  5'- --cUCCGUCCuuuCUCUCCCuccACCGUCUc -3'
miRNA:   3'- acaAGGCGGGc--GAGAGGG---UGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 86076 0.66 0.63388
Target:  5'- aGUcUCCGCgCGCg--CgCCGCCGCCg- -3'
miRNA:   3'- aCA-AGGCGgGCGagaG-GGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 108276 0.66 0.623874
Target:  5'- aGgcCCGCCC-CUC-CaCCACCGUCUg -3'
miRNA:   3'- aCaaGGCGGGcGAGaG-GGUGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 22094 0.66 0.623874
Target:  5'- gUGggCCGCCgGUggg-CCACCGCCUc -3'
miRNA:   3'- -ACaaGGCGGgCGagagGGUGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 45777 0.66 0.623874
Target:  5'- ---aCCGCCCcagaaGCccCUCgCCACCGCCg- -3'
miRNA:   3'- acaaGGCGGG-----CGa-GAG-GGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 17787 0.66 0.623874
Target:  5'- --cUCCGCCCGCUUcgCCC-CC-CCg- -3'
miRNA:   3'- acaAGGCGGGCGAGa-GGGuGGcGGaa -5'
29622 5' -61.7 NC_006151.1 + 30468 0.66 0.623874
Target:  5'- ---cCCGCCC-CUCUcgCCCACgCGCCc- -3'
miRNA:   3'- acaaGGCGGGcGAGA--GGGUG-GCGGaa -5'
29622 5' -61.7 NC_006151.1 + 107514 0.66 0.613874
Target:  5'- cGacCCGCCCaCgCUCCCGCCGUUg- -3'
miRNA:   3'- aCaaGGCGGGcGaGAGGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 33577 0.66 0.613874
Target:  5'- ---aCCGCCCGCcCggccaCCACCGUCg- -3'
miRNA:   3'- acaaGGCGGGCGaGag---GGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 29871 0.66 0.603887
Target:  5'- aGUUcCCGCUcuCGCUCUCuCCuuCGCCa- -3'
miRNA:   3'- aCAA-GGCGG--GCGAGAG-GGugGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 39003 0.66 0.603887
Target:  5'- cGcgCCGCggcgccCCGCUCcgccgCCgCGCCGCCUg -3'
miRNA:   3'- aCaaGGCG------GGCGAGa----GG-GUGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 108179 0.66 0.603887
Target:  5'- ---cCCGCCCGCcCcCCCACCaCCg- -3'
miRNA:   3'- acaaGGCGGGCGaGaGGGUGGcGGaa -5'
29622 5' -61.7 NC_006151.1 + 69102 0.66 0.59392
Target:  5'- cGUgCCG-CCGCaccagCUCCCGCCGCg-- -3'
miRNA:   3'- aCAaGGCgGGCGa----GAGGGUGGCGgaa -5'
29622 5' -61.7 NC_006151.1 + 6744 0.66 0.59392
Target:  5'- -uUUCuCGCCCGCU-UCCUcuGCCGUCUg -3'
miRNA:   3'- acAAG-GCGGGCGAgAGGG--UGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 100731 0.66 0.58398
Target:  5'- gGcgCCGCCCGCg--CCCGCCuucacGCCc- -3'
miRNA:   3'- aCaaGGCGGGCGagaGGGUGG-----CGGaa -5'
29622 5' -61.7 NC_006151.1 + 136960 0.67 0.574073
Target:  5'- cUGcgCCGCCUGCUggagCUgGCCGCCg- -3'
miRNA:   3'- -ACaaGGCGGGCGAga--GGgUGGCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.