miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29623 3' -58.7 NC_006151.1 + 125014 0.66 0.783063
Target:  5'- cUCCgcgagGCCUCGGAGGCCAUcgaCGCCAu--- -3'
miRNA:   3'- -AGG-----UGGGGUCUCUGGUG---GCGGUucua -5'
29623 3' -58.7 NC_006151.1 + 109735 0.66 0.783063
Target:  5'- cUCGCCgCUGGAGcggaugccgugGCCGCCGCCGuuGGAg -3'
miRNA:   3'- aGGUGG-GGUCUC-----------UGGUGGCGGU--UCUa -5'
29623 3' -58.7 NC_006151.1 + 46735 0.66 0.783063
Target:  5'- gCCGgCCCGGGGucggcgaacACCGCCGCUucGGc -3'
miRNA:   3'- aGGUgGGGUCUC---------UGGUGGCGGuuCUa -5'
29623 3' -58.7 NC_006151.1 + 55772 0.66 0.783063
Target:  5'- gCCACCUCGGcuuccucAUCACCaGCCAGGAg -3'
miRNA:   3'- aGGUGGGGUCuc-----UGGUGG-CGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 107275 0.66 0.782144
Target:  5'- gCCACCUCGGAGgagcuguACgGCCGgCCGAGc- -3'
miRNA:   3'- aGGUGGGGUCUC-------UGgUGGC-GGUUCua -5'
29623 3' -58.7 NC_006151.1 + 38058 0.66 0.773814
Target:  5'- gCCGCCCUcGGGcCCGCCuGCCucGAg -3'
miRNA:   3'- aGGUGGGGuCUCuGGUGG-CGGuuCUa -5'
29623 3' -58.7 NC_006151.1 + 103193 0.66 0.773814
Target:  5'- gCCGCCCUGGcGGCCGCC-CCGgacgaGGAg -3'
miRNA:   3'- aGGUGGGGUCuCUGGUGGcGGU-----UCUa -5'
29623 3' -58.7 NC_006151.1 + 137401 0.66 0.773814
Target:  5'- gCCugCCCgccGGGGggcgcccucGCCGCCGCCGcgGGGUc -3'
miRNA:   3'- aGGugGGG---UCUC---------UGGUGGCGGU--UCUA- -5'
29623 3' -58.7 NC_006151.1 + 6245 0.66 0.773814
Target:  5'- --aGCCCUGGcuGCCGCCGUCGGGGc -3'
miRNA:   3'- aggUGGGGUCucUGGUGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 7264 0.66 0.773814
Target:  5'- cUCGCCCCAcGuGGCCGCCcucgGCCAauGGGg -3'
miRNA:   3'- aGGUGGGGU-CuCUGGUGG----CGGU--UCUa -5'
29623 3' -58.7 NC_006151.1 + 23743 0.66 0.764441
Target:  5'- -gCACCUugCAGuGGCCGCCGUCAaAGAa -3'
miRNA:   3'- agGUGGG--GUCuCUGGUGGCGGU-UCUa -5'
29623 3' -58.7 NC_006151.1 + 4146 0.66 0.764441
Target:  5'- cCgGCCCCGGGGAUCGCguCGCgGAGc- -3'
miRNA:   3'- aGgUGGGGUCUCUGGUG--GCGgUUCua -5'
29623 3' -58.7 NC_006151.1 + 37551 0.66 0.764441
Target:  5'- -gCGCCUCAucuacagcGGGGCCGCCGgCGAGGc -3'
miRNA:   3'- agGUGGGGU--------CUCUGGUGGCgGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 69291 0.66 0.764441
Target:  5'- -gCGCCaCCAGGGACacggGCCGCCGGc-- -3'
miRNA:   3'- agGUGG-GGUCUCUGg---UGGCGGUUcua -5'
29623 3' -58.7 NC_006151.1 + 81393 0.66 0.764441
Target:  5'- gCCGCggcgCCCAGGuuGGCCAggguggcguccCCGCCGAGGUc -3'
miRNA:   3'- aGGUG----GGGUCU--CUGGU-----------GGCGGUUCUA- -5'
29623 3' -58.7 NC_006151.1 + 97864 0.66 0.764441
Target:  5'- gUCCGCguuCUCGGcGGCCGCCaCCAGGAa -3'
miRNA:   3'- -AGGUG---GGGUCuCUGGUGGcGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 6216 0.66 0.764441
Target:  5'- aUCCuCgCCGGAGgaGCCGCggCGCCGGGAg -3'
miRNA:   3'- -AGGuGgGGUCUC--UGGUG--GCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 36705 0.66 0.764441
Target:  5'- cCCugCUCGacGAGcCCGCCGCCGcGAg -3'
miRNA:   3'- aGGugGGGU--CUCuGGUGGCGGUuCUa -5'
29623 3' -58.7 NC_006151.1 + 81329 0.66 0.754951
Target:  5'- cUCCGCCCCcucguccGucGCCGCCGCCGcgcccGGGg -3'
miRNA:   3'- -AGGUGGGGu------CucUGGUGGCGGU-----UCUa -5'
29623 3' -58.7 NC_006151.1 + 107535 0.66 0.754951
Target:  5'- gUUgGCCCCGGcGGCC-CCGCCGGc-- -3'
miRNA:   3'- -AGgUGGGGUCuCUGGuGGCGGUUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.