miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29624 3' -58.4 NC_006151.1 + 30919 0.66 0.836953
Target:  5'- cCCGcgGGCGgcccgcgcggaucgCCCgCGcgGUaucGCGGCGGCc -3'
miRNA:   3'- -GGUa-CCGCa-------------GGG-GCuaCA---CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 139659 0.66 0.833712
Target:  5'- gCGgcgGGCGcgcCgCCCGAcagGcccUGCGGCAGCg -3'
miRNA:   3'- gGUa--CCGCa--G-GGGCUa--C---ACGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 133611 0.66 0.833712
Target:  5'- gCCGaggGGCGU-CUgGggGUcGCGGCGGCc -3'
miRNA:   3'- -GGUa--CCGCAgGGgCuaCA-CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 95273 0.66 0.833712
Target:  5'- aUCAUGGCGUUgaCGAaga-CGGCGGCg -3'
miRNA:   3'- -GGUACCGCAGggGCUacacGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 82670 0.66 0.833712
Target:  5'- cCCugcGGCG-CgCCGcgGgcgaggGCGGCGGCc -3'
miRNA:   3'- -GGua-CCGCaGgGGCuaCa-----CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 66773 0.66 0.833712
Target:  5'- ---cGGcCGcCCUCGGgacgGCGGCGGCg -3'
miRNA:   3'- gguaCC-GCaGGGGCUaca-CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 129328 0.66 0.833712
Target:  5'- ---aGGCGgguuagcggCCCCGGg--GCGGcCGGCg -3'
miRNA:   3'- gguaCCGCa--------GGGGCUacaCGCC-GUCG- -5'
29624 3' -58.4 NC_006151.1 + 94771 0.66 0.825488
Target:  5'- gCCGcaGCGUCUCC-AUGaGCGGCAGg -3'
miRNA:   3'- -GGUacCGCAGGGGcUACaCGCCGUCg -5'
29624 3' -58.4 NC_006151.1 + 87898 0.66 0.825488
Target:  5'- gCggGGCGUcacggCCCCGcccgGCGGUAGUa -3'
miRNA:   3'- gGuaCCGCA-----GGGGCuacaCGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 102920 0.66 0.825488
Target:  5'- --cUGGCGgCCgCCGAggaGCGGCuGCg -3'
miRNA:   3'- gguACCGCaGG-GGCUacaCGCCGuCG- -5'
29624 3' -58.4 NC_006151.1 + 52777 0.66 0.825488
Target:  5'- gCCGcGGCGUCCUgGuc--GCGGCucuGCg -3'
miRNA:   3'- -GGUaCCGCAGGGgCuacaCGCCGu--CG- -5'
29624 3' -58.4 NC_006151.1 + 60711 0.66 0.825488
Target:  5'- cCCGccGCGaccucggCCCCGAgGUGCcggagcacgaGGCAGCg -3'
miRNA:   3'- -GGUacCGCa------GGGGCUaCACG----------CCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 112069 0.66 0.824656
Target:  5'- -gGUGGUGgggcugguggagcUCCCCGGgucggGCGGCGGa -3'
miRNA:   3'- ggUACCGC-------------AGGGGCUaca--CGCCGUCg -5'
29624 3' -58.4 NC_006151.1 + 10642 0.66 0.817095
Target:  5'- gCCGgcgcGGCaUCCCCGcccagGCGGCGGg -3'
miRNA:   3'- -GGUa---CCGcAGGGGCuaca-CGCCGUCg -5'
29624 3' -58.4 NC_006151.1 + 122454 0.66 0.817095
Target:  5'- ---cGGCGUCCaCGgcG-GCGGCGGg -3'
miRNA:   3'- gguaCCGCAGGgGCuaCaCGCCGUCg -5'
29624 3' -58.4 NC_006151.1 + 123610 0.66 0.817095
Target:  5'- gCC-UGGCGauauaUCCgCGAgcugGUGCuGGCGGUu -3'
miRNA:   3'- -GGuACCGC-----AGGgGCUa---CACG-CCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 36625 0.66 0.817095
Target:  5'- gCCGgucucGGCG--CCCGgcG-GCGGCGGCg -3'
miRNA:   3'- -GGUa----CCGCagGGGCuaCaCGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 38124 0.66 0.817095
Target:  5'- cCCggGGCcggCCCgGccGaGCGGCGGCa -3'
miRNA:   3'- -GGuaCCGca-GGGgCuaCaCGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 44182 0.66 0.817095
Target:  5'- aCCGcGG-GUCgCCGuccggGCGGCGGCg -3'
miRNA:   3'- -GGUaCCgCAGgGGCuaca-CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 13970 0.66 0.814545
Target:  5'- gCCAUGggggagccgggcccGCGUCCCCGGggcccacgUGUGaGGCcccGGCc -3'
miRNA:   3'- -GGUAC--------------CGCAGGGGCU--------ACACgCCG---UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.