miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29625 5' -58.1 NC_006151.1 + 111668 0.66 0.848293
Target:  5'- cGGCcAGGGGGGCGucGGCGGGccGGAa -3'
miRNA:   3'- -CUGcUCCUCCUGCucCUGCUCcuCCU- -5'
29625 5' -58.1 NC_006151.1 + 16749 0.66 0.840391
Target:  5'- --aGGGGGGaGAUGGGGGagggaGAGaGAGGAc -3'
miRNA:   3'- cugCUCCUC-CUGCUCCUg----CUC-CUCCU- -5'
29625 5' -58.1 NC_006151.1 + 15376 0.66 0.832306
Target:  5'- uGGgGAGGAGugcGACGucGACGAGGAcGAc -3'
miRNA:   3'- -CUgCUCCUC---CUGCucCUGCUCCUcCU- -5'
29625 5' -58.1 NC_006151.1 + 110600 0.66 0.832306
Target:  5'- nGACuuGGGGGGACuuggGGGGACuuGGGGGGa -3'
miRNA:   3'- -CUGc-UCCUCCUG----CUCCUGcuCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 110570 0.66 0.832306
Target:  5'- gGACuuGGGGGGACuuggGGGGACuuGGGGGGa -3'
miRNA:   3'- -CUGc-UCCUCCUG----CUCCUGcuCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 12355 0.66 0.832306
Target:  5'- gGGCGGGGAGcGCGAGcgggagaagguuGGCGAaGGAGaGAg -3'
miRNA:   3'- -CUGCUCCUCcUGCUC------------CUGCU-CCUC-CU- -5'
29625 5' -58.1 NC_006151.1 + 9968 0.66 0.832306
Target:  5'- aGGCgGAGGAGGAgaaGaAGGA-GAGGaAGGAa -3'
miRNA:   3'- -CUG-CUCCUCCUg--C-UCCUgCUCC-UCCU- -5'
29625 5' -58.1 NC_006151.1 + 27450 0.66 0.824047
Target:  5'- gGACGcGGuGGGuCGGGGGCGGgcggucgagcGGGGGGu -3'
miRNA:   3'- -CUGCuCCuCCU-GCUCCUGCU----------CCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 33399 0.66 0.824047
Target:  5'- gGACaGAGGcGGA-GAGGGCGAGcGAGa- -3'
miRNA:   3'- -CUG-CUCCuCCUgCUCCUGCUC-CUCcu -5'
29625 5' -58.1 NC_006151.1 + 110640 0.66 0.824047
Target:  5'- gGACuuGGGGGGACuuggGGGGACuuGGGGGGAu -3'
miRNA:   3'- -CUGc-UCCUCCUG----CUCCUGc-UCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 3833 0.66 0.824047
Target:  5'- uGGCGGggcuGGAGGGCccGGAgcCGGGGAGGc -3'
miRNA:   3'- -CUGCU----CCUCCUGcuCCU--GCUCCUCCu -5'
29625 5' -58.1 NC_006151.1 + 141370 0.66 0.824047
Target:  5'- -cCGAGuAGGACGGGGGCGGGccccGGGc -3'
miRNA:   3'- cuGCUCcUCCUGCUCCUGCUCcu--CCU- -5'
29625 5' -58.1 NC_006151.1 + 30636 0.66 0.807031
Target:  5'- uGCGGGuGGGugGGGGAgGGGGuuGAu -3'
miRNA:   3'- cUGCUCcUCCugCUCCUgCUCCucCU- -5'
29625 5' -58.1 NC_006151.1 + 100454 0.66 0.807031
Target:  5'- aGACGAcGGAGGcgcugcGCGAGuGCGAGGcgcuGGGc -3'
miRNA:   3'- -CUGCU-CCUCC------UGCUCcUGCUCCu---CCU- -5'
29625 5' -58.1 NC_006151.1 + 37426 0.66 0.807031
Target:  5'- cGCGAGGggcucuGGGACGAGGACGAc----- -3'
miRNA:   3'- cUGCUCC------UCCUGCUCCUGCUccuccu -5'
29625 5' -58.1 NC_006151.1 + 42774 0.66 0.807031
Target:  5'- -cCGGGGgguGGGACGugacuGGGCGGGGuggcGGGAc -3'
miRNA:   3'- cuGCUCC---UCCUGCu----CCUGCUCC----UCCU- -5'
29625 5' -58.1 NC_006151.1 + 31963 0.67 0.79829
Target:  5'- -cCGGGGAcgcgGGACGugcccgccgccuGGGagccgGCGAGGAGGAc -3'
miRNA:   3'- cuGCUCCU----CCUGC------------UCC-----UGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 45613 0.67 0.79829
Target:  5'- cGACGGGGcGGGCGgaagGGGGCGuGGAcgccccGGGc -3'
miRNA:   3'- -CUGCUCCuCCUGC----UCCUGCuCCU------CCU- -5'
29625 5' -58.1 NC_006151.1 + 96885 0.67 0.797408
Target:  5'- cGCGGGGgcaugauGGGAUGugucuGGGCGGGGcGGGAc -3'
miRNA:   3'- cUGCUCC-------UCCUGCu----CCUGCUCC-UCCU- -5'
29625 5' -58.1 NC_006151.1 + 41859 0.67 0.792976
Target:  5'- aAUGGGGGGGGgGGGGAgGAGcccggcgucacguccGGGGAa -3'
miRNA:   3'- cUGCUCCUCCUgCUCCUgCUC---------------CUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.