miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 3' -62.2 NC_006151.1 + 137036 0.66 0.672057
Target:  5'- uGCCGGacGCGUGccccCCGGcGCCGgUGUa -3'
miRNA:   3'- gCGGCCcaCGCACua--GGCC-CGGC-ACG- -5'
29631 3' -62.2 NC_006151.1 + 21327 0.66 0.672057
Target:  5'- aCGCCcGGcGCGgcgggGGUCCGcGGCUGgaacgGCu -3'
miRNA:   3'- -GCGGcCCaCGCa----CUAGGC-CCGGCa----CG- -5'
29631 3' -62.2 NC_006151.1 + 4609 0.66 0.672057
Target:  5'- gGCCGuGGggcGCGUGGacCCGGcGCUG-GCa -3'
miRNA:   3'- gCGGC-CCa--CGCACUa-GGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 4314 0.66 0.672057
Target:  5'- uCGCgGGGcacGCGg---CCGGGCUGcGCg -3'
miRNA:   3'- -GCGgCCCa--CGCacuaGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 128808 0.66 0.666233
Target:  5'- aGCgCGGcGcGCGUGGccccguacgcggcgcUCUGGGCCuuGUGCu -3'
miRNA:   3'- gCG-GCC-CaCGCACU---------------AGGCCCGG--CACG- -5'
29631 3' -62.2 NC_006151.1 + 4220 0.66 0.662345
Target:  5'- gGCCGGG-GCGcGGg-CGGGCgCGgGCa -3'
miRNA:   3'- gCGGCCCaCGCaCUagGCCCG-GCaCG- -5'
29631 3' -62.2 NC_006151.1 + 21496 0.66 0.662345
Target:  5'- gGCCGGGggGCGcGGgcgucaCCGGGgCGgGCu -3'
miRNA:   3'- gCGGCCCa-CGCaCUa-----GGCCCgGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 54696 0.66 0.662345
Target:  5'- uCGCCGGcaGCGUG--CUGGGCCaggGCc -3'
miRNA:   3'- -GCGGCCcaCGCACuaGGCCCGGca-CG- -5'
29631 3' -62.2 NC_006151.1 + 34468 0.66 0.662345
Target:  5'- -uCCGGGUccggGCG-GGUCCGGGCuCGa-- -3'
miRNA:   3'- gcGGCCCA----CGCaCUAGGCCCG-GCacg -5'
29631 3' -62.2 NC_006151.1 + 117191 0.66 0.662345
Target:  5'- cCGCCGGGggGCGUcGUaguaguagaCGGGCgCG-GCg -3'
miRNA:   3'- -GCGGCCCa-CGCAcUAg--------GCCCG-GCaCG- -5'
29631 3' -62.2 NC_006151.1 + 11045 0.66 0.652612
Target:  5'- gGCCGGGggcccgGCcUGGaCgCGGGCCacacuGUGCg -3'
miRNA:   3'- gCGGCCCa-----CGcACUaG-GCCCGG-----CACG- -5'
29631 3' -62.2 NC_006151.1 + 51354 0.66 0.652612
Target:  5'- gGCCaGGacCGUGAgcaCCGGcCCGUGCu -3'
miRNA:   3'- gCGGcCCacGCACUa--GGCCcGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 83382 0.66 0.652612
Target:  5'- gCGCCGcaGGUGCuc-GUCCGGGUCcaGCg -3'
miRNA:   3'- -GCGGC--CCACGcacUAGGCCCGGcaCG- -5'
29631 3' -62.2 NC_006151.1 + 97992 0.66 0.642864
Target:  5'- uGCCGGGcgGCGUGG-CCGcguaGGCgGcGCc -3'
miRNA:   3'- gCGGCCCa-CGCACUaGGC----CCGgCaCG- -5'
29631 3' -62.2 NC_006151.1 + 14063 0.66 0.642864
Target:  5'- ---gGGGUGCGUGGcggCCcGGCCGacgGCa -3'
miRNA:   3'- gcggCCCACGCACUa--GGcCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 2824 0.66 0.642864
Target:  5'- gGCCGGGUccaggcggacGCGgacguagacgUGGUagucccccacggCCGGGCCGUccGCg -3'
miRNA:   3'- gCGGCCCA----------CGC----------ACUA------------GGCCCGGCA--CG- -5'
29631 3' -62.2 NC_006151.1 + 59143 0.66 0.633108
Target:  5'- gCGcCCGcGG-GCG-GGUCCaGGCCG-GCg -3'
miRNA:   3'- -GC-GGC-CCaCGCaCUAGGcCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 39977 0.66 0.633108
Target:  5'- cCGCCGcGG-GCGccccgCC-GGCCGUGCu -3'
miRNA:   3'- -GCGGC-CCaCGCacua-GGcCCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 121156 0.66 0.633108
Target:  5'- gGCCGcuGGUGCagacggccGUGua-CGcGGCCGUGCu -3'
miRNA:   3'- gCGGC--CCACG--------CACuagGC-CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 5008 0.66 0.633108
Target:  5'- gCGCgGGGgccggGCG-GGcUCCGGGgCCGggGCc -3'
miRNA:   3'- -GCGgCCCa----CGCaCU-AGGCCC-GGCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.