miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 5' -53.7 NC_006151.1 + 92050 0.66 0.958691
Target:  5'- gCUGCCUGCuGCGccuGcUGCGCAUgcUGCa -3'
miRNA:   3'- -GAUGGACG-UGCc--CuACGCGUAguACG- -5'
29631 5' -53.7 NC_006151.1 + 20987 0.66 0.958691
Target:  5'- -cGCCggGCACGaGGAcgGCGCugccggcgaCGUGCa -3'
miRNA:   3'- gaUGGa-CGUGC-CCUa-CGCGua-------GUACG- -5'
29631 5' -53.7 NC_006151.1 + 42654 0.66 0.958691
Target:  5'- -gGCCggGCAUccccgccgcgGGGAUGUGUG-CGUGCg -3'
miRNA:   3'- gaUGGa-CGUG----------CCCUACGCGUaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 101234 0.66 0.958691
Target:  5'- -gGCCcgGCGgGGGcauGUGCGcCAUCA-GCg -3'
miRNA:   3'- gaUGGa-CGUgCCC---UACGC-GUAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 106646 0.66 0.950708
Target:  5'- -cGCCUGgACGccGcgGCGCA-CGUGCg -3'
miRNA:   3'- gaUGGACgUGCc-CuaCGCGUaGUACG- -5'
29631 5' -53.7 NC_006151.1 + 59355 0.66 0.950708
Target:  5'- -gGCCgcgcGCACGGGGcgccGCGCggccGUCGUcGCg -3'
miRNA:   3'- gaUGGa---CGUGCCCUa---CGCG----UAGUA-CG- -5'
29631 5' -53.7 NC_006151.1 + 27026 0.66 0.950708
Target:  5'- cCUGCCaGCAgGGGGccgagggGCGCuggcgCGUGUa -3'
miRNA:   3'- -GAUGGaCGUgCCCUa------CGCGua---GUACG- -5'
29631 5' -53.7 NC_006151.1 + 18696 0.66 0.946354
Target:  5'- -----cGCGCGGGcgGCGCcggcGUCGUGa -3'
miRNA:   3'- gauggaCGUGCCCuaCGCG----UAGUACg -5'
29631 5' -53.7 NC_006151.1 + 67718 0.66 0.946354
Target:  5'- -cGCCacagGCACGGcGcgGCGCA-CAgGCa -3'
miRNA:   3'- gaUGGa---CGUGCC-CuaCGCGUaGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 112798 0.66 0.946354
Target:  5'- -cACUUuCGCGGGc-GCGCGUCGcUGCa -3'
miRNA:   3'- gaUGGAcGUGCCCuaCGCGUAGU-ACG- -5'
29631 5' -53.7 NC_006151.1 + 127800 0.66 0.946354
Target:  5'- -cGCCgcGCGCGGGG-GCGCgagGUCcuUGCg -3'
miRNA:   3'- gaUGGa-CGUGCCCUaCGCG---UAGu-ACG- -5'
29631 5' -53.7 NC_006151.1 + 133667 0.66 0.943624
Target:  5'- gCUGCCgGCGCGGcGgcGCGCccccgaggcggucucGUCGgcgGCg -3'
miRNA:   3'- -GAUGGaCGUGCC-CuaCGCG---------------UAGUa--CG- -5'
29631 5' -53.7 NC_006151.1 + 72099 0.66 0.941755
Target:  5'- -gGCCUGgGCGaGcgGCaGCGUCAUGg -3'
miRNA:   3'- gaUGGACgUGCcCuaCG-CGUAGUACg -5'
29631 5' -53.7 NC_006151.1 + 98361 0.67 0.936908
Target:  5'- -gGCgUGCGCGGGcucuggGCGCGcgCGcUGCg -3'
miRNA:   3'- gaUGgACGUGCCCua----CGCGUa-GU-ACG- -5'
29631 5' -53.7 NC_006151.1 + 98202 0.67 0.936908
Target:  5'- -cGCC-GCGCGGGGucgagUGCGCGgcg-GCg -3'
miRNA:   3'- gaUGGaCGUGCCCU-----ACGCGUaguaCG- -5'
29631 5' -53.7 NC_006151.1 + 85366 0.67 0.936908
Target:  5'- -cGCCUGCGCGuGGuccccgGCGCgaacGUCG-GCg -3'
miRNA:   3'- gaUGGACGUGC-CCua----CGCG----UAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 77463 0.67 0.936908
Target:  5'- -cACgCUGCGCGGGAacGCGCccgggaaccgcGUCGUcGCc -3'
miRNA:   3'- gaUG-GACGUGCCCUa-CGCG-----------UAGUA-CG- -5'
29631 5' -53.7 NC_006151.1 + 45186 0.67 0.935405
Target:  5'- gUGCCcGCcaccacggacggcgACGGGGUGCGCcgCGcucGCg -3'
miRNA:   3'- gAUGGaCG--------------UGCCCUACGCGuaGUa--CG- -5'
29631 5' -53.7 NC_006151.1 + 72279 0.67 0.93181
Target:  5'- -gGCCaGCAUGcGGUGCGgCGUCAcGCg -3'
miRNA:   3'- gaUGGaCGUGCcCUACGC-GUAGUaCG- -5'
29631 5' -53.7 NC_006151.1 + 39569 0.67 0.926462
Target:  5'- -cGCCUGCAcccCGGGGccgagccgcUGCGCcUC-UGCc -3'
miRNA:   3'- gaUGGACGU---GCCCU---------ACGCGuAGuACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.