miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 5' -58.3 NC_006151.1 + 132616 0.66 0.820458
Target:  5'- cCCaGGUCGACgCUCgcguccgccGUCgGCGCCCg- -3'
miRNA:   3'- uGGaCUAGCUG-GAG---------UAGgCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 141840 0.66 0.820458
Target:  5'- cCCgcgcUCGACgcgaggggCUCGcgCCGCGCCCUCu -3'
miRNA:   3'- uGGacu-AGCUG--------GAGUa-GGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 97843 0.66 0.820458
Target:  5'- cACgUGcgCGcgcagcGCgUCGUCCGCGUUCUCg -3'
miRNA:   3'- -UGgACuaGC------UGgAGUAGGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 32239 0.66 0.803135
Target:  5'- uCCUGGccgcggCGACCgCcgCCGCcGCUCUCg -3'
miRNA:   3'- uGGACUa-----GCUGGaGuaGGCG-CGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 38405 0.66 0.803135
Target:  5'- cGCCcccucCGGCCUCcccggcUCCGgGCCCUCc -3'
miRNA:   3'- -UGGacua-GCUGGAGu-----AGGCgCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 86261 0.66 0.803135
Target:  5'- gGCCgUGGUCGACgaCGaCCGCGgcCCCUUc -3'
miRNA:   3'- -UGG-ACUAGCUGgaGUaGGCGC--GGGAG- -5'
29632 5' -58.3 NC_006151.1 + 112414 0.66 0.803135
Target:  5'- cGCCgcgcgcaGAUCGACCg---CCGCGCCg-- -3'
miRNA:   3'- -UGGa------CUAGCUGGaguaGGCGCGGgag -5'
29632 5' -58.3 NC_006151.1 + 37884 0.66 0.794242
Target:  5'- cGCCgggGAggCGACCgUCGaggcccUCUGCGCCCg- -3'
miRNA:   3'- -UGGa--CUa-GCUGG-AGU------AGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 73075 0.66 0.794242
Target:  5'- gGCUgUGGUCGAacaucagccccuCCUCG-CCGUGCaCCUCg -3'
miRNA:   3'- -UGG-ACUAGCU------------GGAGUaGGCGCG-GGAG- -5'
29632 5' -58.3 NC_006151.1 + 67163 0.66 0.785205
Target:  5'- gACCUGGUU--CCUgGUCCcgcucauCGCCCUCg -3'
miRNA:   3'- -UGGACUAGcuGGAgUAGGc------GCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 99791 0.66 0.785205
Target:  5'- cACCUcGAggcauggcCGACC-CGUCCuucGCGCCCUUc -3'
miRNA:   3'- -UGGA-CUa-------GCUGGaGUAGG---CGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 42406 0.66 0.776033
Target:  5'- gACC-GGUCGucuuCCUCcUCgCGCGCCgUCu -3'
miRNA:   3'- -UGGaCUAGCu---GGAGuAG-GCGCGGgAG- -5'
29632 5' -58.3 NC_006151.1 + 132651 0.67 0.766734
Target:  5'- gACCUGGgccgCcACCUCGUCCGCggagGCCgaCa -3'
miRNA:   3'- -UGGACUa---GcUGGAGUAGGCG----CGGgaG- -5'
29632 5' -58.3 NC_006151.1 + 57600 0.67 0.766734
Target:  5'- gACCaGGcCGGCCUCggCCGCGgCCg- -3'
miRNA:   3'- -UGGaCUaGCUGGAGuaGGCGCgGGag -5'
29632 5' -58.3 NC_006151.1 + 37196 0.67 0.757318
Target:  5'- gGCCc--UCGGCCUCcUCCGCcUCCUCc -3'
miRNA:   3'- -UGGacuAGCUGGAGuAGGCGcGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 39145 0.67 0.751616
Target:  5'- gGCCUGGgacccgcgccgcggCGGCCUC-UCgGCGCUgCUCg -3'
miRNA:   3'- -UGGACUa-------------GCUGGAGuAGgCGCGG-GAG- -5'
29632 5' -58.3 NC_006151.1 + 73276 0.67 0.751616
Target:  5'- uGCCggcGUUGACCgugcggcgcagguagUCGUCCGCGUCCg- -3'
miRNA:   3'- -UGGac-UAGCUGG---------------AGUAGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 12079 0.67 0.748751
Target:  5'- gGCCUcccCGACCUCucucacccgcccucCCGCGCUCUCu -3'
miRNA:   3'- -UGGAcuaGCUGGAGua------------GGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 38821 0.67 0.747794
Target:  5'- cGCCcGAcggCGGCUUCcgCCGCGUCC-Cg -3'
miRNA:   3'- -UGGaCUa--GCUGGAGuaGGCGCGGGaG- -5'
29632 5' -58.3 NC_006151.1 + 122792 0.67 0.738169
Target:  5'- -gCUGcgCGGCCUCGcCCGacgaGCgCCUCg -3'
miRNA:   3'- ugGACuaGCUGGAGUaGGCg---CG-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.