miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29633 3' -60.8 NC_006151.1 + 48802 0.66 0.720181
Target:  5'- -----cGgGGC-GCCCaCGuGGGACGCCu -3'
miRNA:   3'- ucaugaUgCCGaCGGG-GC-CCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 6153 0.66 0.720181
Target:  5'- gAGgACgGCGGCcucgGCCUCGGcGGCGUCg -3'
miRNA:   3'- -UCaUGaUGCCGa---CGGGGCCcCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 89858 0.66 0.720181
Target:  5'- uGUGCgggACGGUcGCCUCGuaGACGCg -3'
miRNA:   3'- uCAUGa--UGCCGaCGGGGCccCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 40525 0.66 0.720181
Target:  5'- aGGUgGCUGCGGCgGCggCGGaGGugGCg -3'
miRNA:   3'- -UCA-UGAUGCCGaCGggGCC-CCugCGg -5'
29633 3' -60.8 NC_006151.1 + 57469 0.66 0.720181
Target:  5'- aGGUGCcgcgccGCGGCgGCCUCGcaGGcGACGCg -3'
miRNA:   3'- -UCAUGa-----UGCCGaCGGGGC--CC-CUGCGg -5'
29633 3' -60.8 NC_006151.1 + 124143 0.66 0.719221
Target:  5'- uGGUGCgGCuggagcccgagcaGGcCUGCCCCGaguacucgcaGGGGCGCa -3'
miRNA:   3'- -UCAUGaUG-------------CC-GACGGGGC----------CCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 15036 0.66 0.710552
Target:  5'- aGGUGCgcguccACGGCgcgcgggGCCCCGG---CGCCu -3'
miRNA:   3'- -UCAUGa-----UGCCGa------CGGGGCCccuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 57850 0.66 0.710552
Target:  5'- gGGUGCUccACGGCgcuggucgcgcGCCCCGccGGcaGACGUCg -3'
miRNA:   3'- -UCAUGA--UGCCGa----------CGGGGC--CC--CUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 59841 0.66 0.710552
Target:  5'- --cGCcacCGGCcgGUCCgGGGGGCGCa -3'
miRNA:   3'- ucaUGau-GCCGa-CGGGgCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 67742 0.66 0.710552
Target:  5'- aGGcACggcGCGGCgGCCCCgucGGGGugcgGCGUCg -3'
miRNA:   3'- -UCaUGa--UGCCGaCGGGG---CCCC----UGCGG- -5'
29633 3' -60.8 NC_006151.1 + 71086 0.66 0.710552
Target:  5'- --cACcACGGC-GCCgCGGgcgcGGGCGCCg -3'
miRNA:   3'- ucaUGaUGCCGaCGGgGCC----CCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 133285 0.66 0.707651
Target:  5'- --gGCgGCGGCccacgucgagguucuCCCCGGGGGCgGCCc -3'
miRNA:   3'- ucaUGaUGCCGac-------------GGGGCCCCUG-CGG- -5'
29633 3' -60.8 NC_006151.1 + 98216 0.66 0.700861
Target:  5'- gAGUGCgcgGCGGC-GCCCgCGcGcGGAC-CCu -3'
miRNA:   3'- -UCAUGa--UGCCGaCGGG-GC-C-CCUGcGG- -5'
29633 3' -60.8 NC_006151.1 + 129529 0.66 0.700861
Target:  5'- --cGCcgACGGgggGgCCCGGGGcCGCCg -3'
miRNA:   3'- ucaUGa-UGCCga-CgGGGCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 74138 0.66 0.700861
Target:  5'- gGGUGCaGCGGgUG-CCgGGGGuCGUCc -3'
miRNA:   3'- -UCAUGaUGCCgACgGGgCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 54792 0.66 0.700861
Target:  5'- uGUACUACGa--GCCCCGGcaccGGCGCg -3'
miRNA:   3'- uCAUGAUGCcgaCGGGGCCc---CUGCGg -5'
29633 3' -60.8 NC_006151.1 + 127529 0.66 0.700861
Target:  5'- uGGcGCgucaGCGGg-GCCCaGGGGGCGUCg -3'
miRNA:   3'- -UCaUGa---UGCCgaCGGGgCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 28305 0.66 0.691116
Target:  5'- --cAUUGgcCGGCgcguCCCCGGGG-CGCCc -3'
miRNA:   3'- ucaUGAU--GCCGac--GGGGCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 23245 0.66 0.691116
Target:  5'- --cGCccuCGGggGCCUCGGGGGCaucGCCg -3'
miRNA:   3'- ucaUGau-GCCgaCGGGGCCCCUG---CGG- -5'
29633 3' -60.8 NC_006151.1 + 97347 0.66 0.682306
Target:  5'- aGGUACgcggggaaggccgcgGCGGCggcggGCgCggCGGGGGCGUCg -3'
miRNA:   3'- -UCAUGa--------------UGCCGa----CGgG--GCCCCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.