miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 3' -55 NC_006151.1 + 19630 0.66 0.942401
Target:  5'- -cACGGCGCCGucGCCgc-GCG-CGUCGa -3'
miRNA:   3'- caUGCUGCGGC--CGGacaUGUaGCAGC- -5'
29634 3' -55 NC_006151.1 + 80915 0.66 0.942401
Target:  5'- -gACGuCGCC-GCC-GUGCAgCGUCGg -3'
miRNA:   3'- caUGCuGCGGcCGGaCAUGUaGCAGC- -5'
29634 3' -55 NC_006151.1 + 57714 0.66 0.9377
Target:  5'- -cACGAgCGCCGGCUUG-ACcgCG-CGc -3'
miRNA:   3'- caUGCU-GCGGCCGGACaUGuaGCaGC- -5'
29634 3' -55 NC_006151.1 + 39462 0.66 0.9377
Target:  5'- aGUGCGccguGCGCUGGCCcggGUGCcgCGa-- -3'
miRNA:   3'- -CAUGC----UGCGGCCGGa--CAUGuaGCagc -5'
29634 3' -55 NC_006151.1 + 21976 0.66 0.937216
Target:  5'- gGUGCGGCGCCGGCagcgcccaaagauCUGccugGgGUCGcagUCGg -3'
miRNA:   3'- -CAUGCUGCGGCCG-------------GACa---UgUAGC---AGC- -5'
29634 3' -55 NC_006151.1 + 45556 0.66 0.93276
Target:  5'- -cACGACGgCGcGCCcgGgcCAUCGUCc -3'
miRNA:   3'- caUGCUGCgGC-CGGa-CauGUAGCAGc -5'
29634 3' -55 NC_006151.1 + 5135 0.66 0.93276
Target:  5'- aGUGgGGCGCCgGGCCgg-ACuccuUCGUCu -3'
miRNA:   3'- -CAUgCUGCGG-CCGGacaUGu---AGCAGc -5'
29634 3' -55 NC_006151.1 + 121409 0.66 0.92758
Target:  5'- cUGCGGCGCgGGCggGgACGUCG-CGg -3'
miRNA:   3'- cAUGCUGCGgCCGgaCaUGUAGCaGC- -5'
29634 3' -55 NC_006151.1 + 130898 0.66 0.92758
Target:  5'- ---aGGCGgCGGCCgucgcCGUCGUCGg -3'
miRNA:   3'- caugCUGCgGCCGGacau-GUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 64009 0.66 0.92758
Target:  5'- gGUGCGGCGCCaGGCgCccgAUcgCGUCGc -3'
miRNA:   3'- -CAUGCUGCGG-CCG-GacaUGuaGCAGC- -5'
29634 3' -55 NC_006151.1 + 101920 0.66 0.92758
Target:  5'- -aGCGGCGCCGGCCcc--CGUgGcCGg -3'
miRNA:   3'- caUGCUGCGGCCGGacauGUAgCaGC- -5'
29634 3' -55 NC_006151.1 + 54671 0.66 0.92216
Target:  5'- -cACGACcugGCCGGgcaCCUGcGCGUCGcCGg -3'
miRNA:   3'- caUGCUG---CGGCC---GGACaUGUAGCaGC- -5'
29634 3' -55 NC_006151.1 + 18443 0.67 0.916501
Target:  5'- -gGCGuCGCCcGCCUccuCGUCGUCGu -3'
miRNA:   3'- caUGCuGCGGcCGGAcauGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 78153 0.67 0.910602
Target:  5'- -gACGACGCCucGGCCgc--CGUgGUCGa -3'
miRNA:   3'- caUGCUGCGG--CCGGacauGUAgCAGC- -5'
29634 3' -55 NC_006151.1 + 113867 0.67 0.904467
Target:  5'- -aGCGACGgCGGCucCUGcgGCgcaaGUCGUCGg -3'
miRNA:   3'- caUGCUGCgGCCG--GACa-UG----UAGCAGC- -5'
29634 3' -55 NC_006151.1 + 88458 0.67 0.904467
Target:  5'- cGUGCGGCGCCcgagcucgucGGCCacgGUGCuguUgGUCa -3'
miRNA:   3'- -CAUGCUGCGG----------CCGGa--CAUGu--AgCAGc -5'
29634 3' -55 NC_006151.1 + 37034 0.67 0.904467
Target:  5'- -cGCGGCGCuCGGCCUccuCcUCGUCc -3'
miRNA:   3'- caUGCUGCG-GCCGGAcauGuAGCAGc -5'
29634 3' -55 NC_006151.1 + 85675 0.67 0.89614
Target:  5'- -gACGGCaaccugcgcuuccuGCUGGCCcacUACGUCGUCGu -3'
miRNA:   3'- caUGCUG--------------CGGCCGGac-AUGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 102872 0.67 0.894162
Target:  5'- -cGCGugGCCaacgccgcgguggcgGGCCUGcgccGCcUCGUCGa -3'
miRNA:   3'- caUGCugCGG---------------CCGGACa---UGuAGCAGC- -5'
29634 3' -55 NC_006151.1 + 133566 0.67 0.891493
Target:  5'- -gACGGCGCCGaCCgGUAggagaagcCGUCGUCa -3'
miRNA:   3'- caUGCUGCGGCcGGaCAU--------GUAGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.