miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 5' -59.5 NC_006151.1 + 139658 0.66 0.798105
Target:  5'- cGCGGCGggcGCGCCgcccgacagGCCcugCGGCAgCGg -3'
miRNA:   3'- cCGCUGC---UGCGGa--------UGGa--GCCGUgGCa -5'
29634 5' -59.5 NC_006151.1 + 5064 0.66 0.798105
Target:  5'- aGGCGGagGAgGCCgaggGCCgCGGgGCCGc -3'
miRNA:   3'- -CCGCUg-CUgCGGa---UGGaGCCgUGGCa -5'
29634 5' -59.5 NC_006151.1 + 105390 0.66 0.798105
Target:  5'- aGCGACGcCGUCUACC-CG-CGCCu- -3'
miRNA:   3'- cCGCUGCuGCGGAUGGaGCcGUGGca -5'
29634 5' -59.5 NC_006151.1 + 55471 0.66 0.798105
Target:  5'- gGGgGGCG-CGC--GCC-CGGCGCCGc -3'
miRNA:   3'- -CCgCUGCuGCGgaUGGaGCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 59945 0.66 0.798105
Target:  5'- cGGCGGCu-CGCagcCCUCGaGCGCCa- -3'
miRNA:   3'- -CCGCUGcuGCGgauGGAGC-CGUGGca -5'
29634 5' -59.5 NC_006151.1 + 72271 0.66 0.798105
Target:  5'- aGCGGCGugGCCaGCaugCGGUGCgGc -3'
miRNA:   3'- cCGCUGCugCGGaUGga-GCCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 99502 0.66 0.798105
Target:  5'- gGGCGugGagcacgugguGCGCC-ACUgcaUGGCGCCGc -3'
miRNA:   3'- -CCGCugC----------UGCGGaUGGa--GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 106950 0.66 0.798105
Target:  5'- gGGCGA--GCGCCUGCU--GGCGCuCGa -3'
miRNA:   3'- -CCGCUgcUGCGGAUGGagCCGUG-GCa -5'
29634 5' -59.5 NC_006151.1 + 130353 0.66 0.798105
Target:  5'- cGGCGuCGugGUUgacgGCCgCGcGCGCCGc -3'
miRNA:   3'- -CCGCuGCugCGGa---UGGaGC-CGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 103874 0.66 0.798105
Target:  5'- aGGgGACGcuggucgaggcGCGCC-ACCU-GGCGCUGg -3'
miRNA:   3'- -CCgCUGC-----------UGCGGaUGGAgCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 139926 0.66 0.797233
Target:  5'- gGGCu-CGuCGCCguggGCCgccguccucgaguUCGGCGCCGa -3'
miRNA:   3'- -CCGcuGCuGCGGa---UGG-------------AGCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 100227 0.66 0.796359
Target:  5'- gGGCGcCGugGCCgagcgcguggugGCgCUCGaGCGCCu- -3'
miRNA:   3'- -CCGCuGCugCGGa-----------UG-GAGC-CGUGGca -5'
29634 5' -59.5 NC_006151.1 + 49184 0.66 0.789321
Target:  5'- gGGUGcugcugcugaacACGACGCUgACCgugCGGCGCgGg -3'
miRNA:   3'- -CCGC------------UGCUGCGGaUGGa--GCCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 107048 0.66 0.789321
Target:  5'- uGGcCGGCGAgccgGCCUGCCUC-GUGCUGg -3'
miRNA:   3'- -CC-GCUGCUg---CGGAUGGAGcCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 70773 0.66 0.789321
Target:  5'- cGGCcaACG-CGCgcGCCUcCGGCACCGg -3'
miRNA:   3'- -CCGc-UGCuGCGgaUGGA-GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 84922 0.66 0.789321
Target:  5'- cGCGGCGcCGCCUccggcgugcuCUUCGGCACg-- -3'
miRNA:   3'- cCGCUGCuGCGGAu---------GGAGCCGUGgca -5'
29634 5' -59.5 NC_006151.1 + 22939 0.66 0.789321
Target:  5'- cGGUGAUGcCGCUggguCCUCGGUcguCCGc -3'
miRNA:   3'- -CCGCUGCuGCGGau--GGAGCCGu--GGCa -5'
29634 5' -59.5 NC_006151.1 + 24959 0.66 0.789321
Target:  5'- cGUGACGAUGCgcGCCgCGGCcuGCCGc -3'
miRNA:   3'- cCGCUGCUGCGgaUGGaGCCG--UGGCa -5'
29634 5' -59.5 NC_006151.1 + 119978 0.66 0.789321
Target:  5'- cGGCGACGA-GCUU-CCUggcgCGGCGCaCGc -3'
miRNA:   3'- -CCGCUGCUgCGGAuGGA----GCCGUG-GCa -5'
29634 5' -59.5 NC_006151.1 + 87070 0.66 0.783986
Target:  5'- cGGgGA-GGCGCCgccccccgcgagcgACCUCGcCGCCGUg -3'
miRNA:   3'- -CCgCUgCUGCGGa-------------UGGAGCcGUGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.