miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 5' -65.7 NC_006151.1 + 38613 0.66 0.502026
Target:  5'- gAGGaCGagGGGCUcucCGgCGCGGCCcUCCg -3'
miRNA:   3'- -UCCaGCa-CCCGA---GCgGCGCCGGcGGG- -5'
29636 5' -65.7 NC_006151.1 + 85336 0.66 0.502026
Target:  5'- gAGGgccacagCGU--GCUCGCCGCgcuGGCgCGCCUg -3'
miRNA:   3'- -UCCa------GCAccCGAGCGGCG---CCG-GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 49165 0.66 0.502026
Target:  5'- gAGGcC-UGGGCgCGCCGCGggguGCUGCUg -3'
miRNA:   3'- -UCCaGcACCCGaGCGGCGC----CGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 60801 0.66 0.502026
Target:  5'- ---aCGcUGGGCUCGCCGC-GCaGCuCCa -3'
miRNA:   3'- uccaGC-ACCCGAGCGGCGcCGgCG-GG- -5'
29636 5' -65.7 NC_006151.1 + 64460 0.66 0.502026
Target:  5'- cAGGaUgGcGGcGCgcgcCGCCGCGGCggggaCGCCCg -3'
miRNA:   3'- -UCC-AgCaCC-CGa---GCGGCGCCG-----GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 93808 0.66 0.502026
Target:  5'- gAGGUUGgaUGGcCUCGUCGCGGCUGa-- -3'
miRNA:   3'- -UCCAGC--ACCcGAGCGGCGCCGGCggg -5'
29636 5' -65.7 NC_006151.1 + 64297 0.66 0.502026
Target:  5'- -cGUUGUcGGGCgUGCCGCaGCgCGCCg -3'
miRNA:   3'- ucCAGCA-CCCGaGCGGCGcCG-GCGGg -5'
29636 5' -65.7 NC_006151.1 + 118313 0.66 0.502026
Target:  5'- cGGGgacugCGUGcccccgaGCagCGCCGCGcCCGCCCu -3'
miRNA:   3'- -UCCa----GCACc------CGa-GCGGCGCcGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 123918 0.66 0.502026
Target:  5'- cGGcCGUgacgcGGGC-CGCCuCGGCCucgccgacGCCCg -3'
miRNA:   3'- uCCaGCA-----CCCGaGCGGcGCCGG--------CGGG- -5'
29636 5' -65.7 NC_006151.1 + 18765 0.66 0.502026
Target:  5'- gGGGUgccCG-GGGCccggGCCGgGGCCGUCa -3'
miRNA:   3'- -UCCA---GCaCCCGag--CGGCgCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 57542 0.66 0.502026
Target:  5'- cGGcCGcGGGCacgUCGCCGa-GCaCGCCCc -3'
miRNA:   3'- uCCaGCaCCCG---AGCGGCgcCG-GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 104460 0.66 0.499316
Target:  5'- -cGcCGUGGGCuUCGUCGgGGCggacauggcgcacgUGCCCc -3'
miRNA:   3'- ucCaGCACCCG-AGCGGCgCCG--------------GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 109642 0.66 0.493018
Target:  5'- cGGG-CGagaGGaGC-CGCCGCuGCCGCCa -3'
miRNA:   3'- -UCCaGCa--CC-CGaGCGGCGcCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 78177 0.66 0.493018
Target:  5'- gAGGcCGUGuccGC-CGUCGCGGCgGaCCCc -3'
miRNA:   3'- -UCCaGCACc--CGaGCGGCGCCGgC-GGG- -5'
29636 5' -65.7 NC_006151.1 + 70622 0.66 0.493018
Target:  5'- cAGGagaUCcucGGCggCGCCGUGGCCGCgCg -3'
miRNA:   3'- -UCC---AGcacCCGa-GCGGCGCCGGCGgG- -5'
29636 5' -65.7 NC_006151.1 + 57512 0.66 0.493018
Target:  5'- cGGcCGc-GGCg-GCgGCGGCCGCCUc -3'
miRNA:   3'- uCCaGCacCCGagCGgCGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 5738 0.66 0.493018
Target:  5'- gGGGUCcgaGGCcgCGCCGcCGGCCcggGCUCa -3'
miRNA:   3'- -UCCAGcacCCGa-GCGGC-GCCGG---CGGG- -5'
29636 5' -65.7 NC_006151.1 + 49655 0.66 0.493018
Target:  5'- gAGGUCGagcccuccGGGCcgCGCCcggaggacGCGGaCgCGCCCc -3'
miRNA:   3'- -UCCAGCa-------CCCGa-GCGG--------CGCC-G-GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 5013 0.66 0.493018
Target:  5'- gGGGcCGggcGGGCUCcgggGCCGgGGCCggggagGCCg -3'
miRNA:   3'- -UCCaGCa--CCCGAG----CGGCgCCGG------CGGg -5'
29636 5' -65.7 NC_006151.1 + 125095 0.66 0.493018
Target:  5'- gAGGUguaccucgcccgCGgGGGCuUCGUgGUGGCCuuccGCCCg -3'
miRNA:   3'- -UCCA------------GCaCCCG-AGCGgCGCCGG----CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.