miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 5' -65.7 NC_006151.1 + 130625 0.71 0.223088
Target:  5'- uGGUCGc-GGCUcacgagCGCCGCcgaGGCCGCCUg -3'
miRNA:   3'- uCCAGCacCCGA------GCGGCG---CCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 130353 0.7 0.261344
Target:  5'- cGGcGUCGUGGuugacggccGCgcgCGCCGCGG-CGUCCa -3'
miRNA:   3'- -UC-CAGCACC---------CGa--GCGGCGCCgGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 129175 0.71 0.249897
Target:  5'- -cGUCGcgcaGGGC-CGCCaCGGCCGCCg -3'
miRNA:   3'- ucCAGCa---CCCGaGCGGcGCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 128536 0.67 0.399526
Target:  5'- gAGGccaCGgcGGGCcCGCCgGCGcgguGCCGCCCa -3'
miRNA:   3'- -UCCa--GCa-CCCGaGCGG-CGC----CGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 128138 0.66 0.484085
Target:  5'- ---cCGUGGGCcCGCCGUacgaggccaGGCUGCgCg -3'
miRNA:   3'- uccaGCACCCGaGCGGCG---------CCGGCGgG- -5'
29636 5' -65.7 NC_006151.1 + 128008 0.69 0.339058
Target:  5'- cGGUCGcgGGGCggCGgCGaCGGCgucugcgaCGCCCg -3'
miRNA:   3'- uCCAGCa-CCCGa-GCgGC-GCCG--------GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 127828 0.67 0.423085
Target:  5'- cGGUucacguaCGU-GGCggCGUCGCGGCUGCgCCg -3'
miRNA:   3'- uCCA-------GCAcCCGa-GCGGCGCCGGCG-GG- -5'
29636 5' -65.7 NC_006151.1 + 127541 0.71 0.238867
Target:  5'- gGGGcCcaggGGGCgucgUCGUCGUGGCCGCCg -3'
miRNA:   3'- -UCCaGca--CCCG----AGCGGCGCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 127385 0.67 0.415684
Target:  5'- gGGGUgGcGGGg--GCCGCGGCCgagucgacgggaGCCCg -3'
miRNA:   3'- -UCCAgCaCCCgagCGGCGCCGG------------CGGG- -5'
29636 5' -65.7 NC_006151.1 + 126035 0.66 0.47523
Target:  5'- cGGcgaCGUGGGCgcCGCCGuCGGCaaggugGUCCu -3'
miRNA:   3'- uCCa--GCACCCGa-GCGGC-GCCGg-----CGGG- -5'
29636 5' -65.7 NC_006151.1 + 125380 0.69 0.325017
Target:  5'- ---aUGcUGGGC-CGCauCGCGGCCGCCUg -3'
miRNA:   3'- uccaGC-ACCCGaGCG--GCGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 125199 0.85 0.025834
Target:  5'- cGGcGUCGUGGGCcccgCGgcccCCGCGGCCGCCCg -3'
miRNA:   3'- -UC-CAGCACCCGa---GC----GGCGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 125095 0.66 0.493018
Target:  5'- gAGGUguaccucgcccgCGgGGGCuUCGUgGUGGCCuuccGCCCg -3'
miRNA:   3'- -UCCA------------GCaCCCG-AGCGgCGCCGG----CGGG- -5'
29636 5' -65.7 NC_006151.1 + 124140 0.66 0.484085
Target:  5'- cGGUgGUGcGGCUggaGCCcgaGCaGGCCuGCCCc -3'
miRNA:   3'- uCCAgCAC-CCGAg--CGG---CG-CCGG-CGGG- -5'
29636 5' -65.7 NC_006151.1 + 123918 0.66 0.502026
Target:  5'- cGGcCGUgacgcGGGC-CGCCuCGGCCucgccgacGCCCg -3'
miRNA:   3'- uCCaGCA-----CCCGaGCGGcGCCGG--------CGGG- -5'
29636 5' -65.7 NC_006151.1 + 123881 0.7 0.273215
Target:  5'- ---cUGcUGGcGCUCGCCGCGGCCccGCCg -3'
miRNA:   3'- uccaGC-ACC-CGAGCGGCGCCGG--CGGg -5'
29636 5' -65.7 NC_006151.1 + 123035 0.67 0.415684
Target:  5'- uGG-CGUGGGCggaccugccgGCCGCGGCgcugcgcgaCGCCg -3'
miRNA:   3'- uCCaGCACCCGag--------CGGCGCCG---------GCGGg -5'
29636 5' -65.7 NC_006151.1 + 122775 0.73 0.185306
Target:  5'- cGGGcugcUCGUGGGCg-GCugCGCGGCCucGCCCg -3'
miRNA:   3'- -UCC----AGCACCCGagCG--GCGCCGG--CGGG- -5'
29636 5' -65.7 NC_006151.1 + 122694 0.75 0.135902
Target:  5'- cGGcCGUGGaGCUCGCgcucuucggGCGGCgGCCCg -3'
miRNA:   3'- uCCaGCACC-CGAGCGg--------CGCCGgCGGG- -5'
29636 5' -65.7 NC_006151.1 + 122374 0.66 0.466457
Target:  5'- cGGGcUCGacgaGGCgCGCCGCGGgCGCgCg -3'
miRNA:   3'- -UCC-AGCac--CCGaGCGGCGCCgGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.