miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 3' -60.8 NC_006151.1 + 76709 0.65 0.732027
Target:  5'- gGGCG-CGCCG-CgGCCGCCuuuuaaugcaugauGGAGCgCGc -3'
miRNA:   3'- -CCGUaGUGGCuGaCGGCGG--------------CCUCG-GC- -5'
29637 3' -60.8 NC_006151.1 + 137415 0.66 0.725371
Target:  5'- gGGCGcccUCGCCG-CcGCCGCgGGGuCCGc -3'
miRNA:   3'- -CCGU---AGUGGCuGaCGGCGgCCUcGGC- -5'
29637 3' -60.8 NC_006151.1 + 133315 0.66 0.725371
Target:  5'- gGGCggC-CCGugUcgagGCgCGCCGGgcGGCCGg -3'
miRNA:   3'- -CCGuaGuGGCugA----CG-GCGGCC--UCGGC- -5'
29637 3' -60.8 NC_006151.1 + 109599 0.66 0.725371
Target:  5'- cGCucuUCACCccGCcGCCGUCGGAcccGCCGg -3'
miRNA:   3'- cCGu--AGUGGc-UGaCGGCGGCCU---CGGC- -5'
29637 3' -60.8 NC_006151.1 + 37689 0.66 0.725371
Target:  5'- cGGCAgcgugacccCGCCG-CUGCCGCacaucggGGAcGCCa -3'
miRNA:   3'- -CCGUa--------GUGGCuGACGGCGg------CCU-CGGc -5'
29637 3' -60.8 NC_006151.1 + 27197 0.66 0.725371
Target:  5'- gGGCcgCGCaGAa-GgCGCCGGGGCCc -3'
miRNA:   3'- -CCGuaGUGgCUgaCgGCGGCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 59231 0.66 0.725371
Target:  5'- -aCGUCuGCCGGCUGCgGCCGacgcgcacGCCGa -3'
miRNA:   3'- ccGUAG-UGGCUGACGgCGGCcu------CGGC- -5'
29637 3' -60.8 NC_006151.1 + 76361 0.66 0.724417
Target:  5'- cGCgAUCAUCGGCUGCUGCaccucaaacuggaUGGuGCCc -3'
miRNA:   3'- cCG-UAGUGGCUGACGGCG-------------GCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 86182 0.66 0.715799
Target:  5'- uGGC--CGCCGcGCUGCCcCCGGcgGGCCc -3'
miRNA:   3'- -CCGuaGUGGC-UGACGGcGGCC--UCGGc -5'
29637 3' -60.8 NC_006151.1 + 137078 0.66 0.715799
Target:  5'- uGGCG-CACCGGCgccagGCCuucgcggugcugGCCGGGGaCGc -3'
miRNA:   3'- -CCGUaGUGGCUGa----CGG------------CGGCCUCgGC- -5'
29637 3' -60.8 NC_006151.1 + 56102 0.66 0.715799
Target:  5'- aGUAcCGCCGccGCUGCCucGCCGGggaGGCCu -3'
miRNA:   3'- cCGUaGUGGC--UGACGG--CGGCC---UCGGc -5'
29637 3' -60.8 NC_006151.1 + 129180 0.66 0.710023
Target:  5'- cGCAggGCCGccACgGCCGCCgucagcaccuccccgGGGGCCGc -3'
miRNA:   3'- cCGUagUGGC--UGaCGGCGG---------------CCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 106670 0.66 0.706161
Target:  5'- cGCGagGCCGcgGCgcucgGCgCGCCGGGcGCCGg -3'
miRNA:   3'- cCGUagUGGC--UGa----CG-GCGGCCU-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 134467 0.66 0.706161
Target:  5'- uGCAccgCACgGACgGCCGCCacuGGGCCu -3'
miRNA:   3'- cCGUa--GUGgCUGaCGGCGGc--CUCGGc -5'
29637 3' -60.8 NC_006151.1 + 5116 0.66 0.706161
Target:  5'- uGGCGgcccggCGCgGGCgaguggGgCGCCGG-GCCGg -3'
miRNA:   3'- -CCGUa-----GUGgCUGa-----CgGCGGCCuCGGC- -5'
29637 3' -60.8 NC_006151.1 + 13173 0.66 0.706161
Target:  5'- gGGacgGUCGCCG-CgGCCGUcuCGGGGCCc -3'
miRNA:   3'- -CCg--UAGUGGCuGaCGGCG--GCCUCGGc -5'
29637 3' -60.8 NC_006151.1 + 24741 0.66 0.706161
Target:  5'- cGGCAggACCaGGCacGUCGCCGG-GCCc -3'
miRNA:   3'- -CCGUagUGG-CUGa-CGGCGGCCuCGGc -5'
29637 3' -60.8 NC_006151.1 + 84615 0.66 0.706161
Target:  5'- cGCGcCGCCGcGCgGCCGCCGcGGcGCUGg -3'
miRNA:   3'- cCGUaGUGGC-UGaCGGCGGC-CU-CGGC- -5'
29637 3' -60.8 NC_006151.1 + 87252 0.66 0.706161
Target:  5'- gGGCGcuguaccCGCCGAUguacGCCccccaGCCGGGGCUGc -3'
miRNA:   3'- -CCGUa------GUGGCUGa---CGG-----CGGCCUCGGC- -5'
29637 3' -60.8 NC_006151.1 + 102976 0.66 0.706161
Target:  5'- cGGCGcgCuGCUGGCgcaGCUGCUGGAGgCGg -3'
miRNA:   3'- -CCGUa-G-UGGCUGa--CGGCGGCCUCgGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.