miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 19723 0.66 0.649222
Target:  5'- gGCCGag-CCGaagCCCgcgCGGCGGUCgUCg -3'
miRNA:   3'- -CGGUguaGGCga-GGGa--GCCGCCGG-AG- -5'
29638 3' -62.1 NC_006151.1 + 67171 0.66 0.649222
Target:  5'- uCCugGUcCCGCUcaucgCCCUCGcGCuGGCCa- -3'
miRNA:   3'- cGGugUA-GGCGA-----GGGAGC-CG-CCGGag -5'
29638 3' -62.1 NC_006151.1 + 99001 0.66 0.646262
Target:  5'- cGCCACG-CCGCgcacggCCgUCGaggugcgcgucuccGCGGcCCUCg -3'
miRNA:   3'- -CGGUGUaGGCGa-----GGgAGC--------------CGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 36002 0.66 0.639351
Target:  5'- aUCGCGUCCgGC-CCCgaCGGCGGCa-- -3'
miRNA:   3'- cGGUGUAGG-CGaGGGa-GCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 135991 0.66 0.639351
Target:  5'- gGCCACcUUCGC-CCUccaCGaCGGCCUCa -3'
miRNA:   3'- -CGGUGuAGGCGaGGGa--GCcGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 133421 0.66 0.639351
Target:  5'- gGCCGCGgaCGCgggggUCUUGGCGGCCg- -3'
miRNA:   3'- -CGGUGUagGCGag---GGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 68128 0.66 0.639351
Target:  5'- aGCuCGCcgCCGCUCCCgCGGagcguGGUCg- -3'
miRNA:   3'- -CG-GUGuaGGCGAGGGaGCCg----CCGGag -5'
29638 3' -62.1 NC_006151.1 + 96015 0.66 0.639351
Target:  5'- gGCgCGCA-CCGCcUCCUCGGUGGUg-- -3'
miRNA:   3'- -CG-GUGUaGGCGaGGGAGCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 65857 0.66 0.633425
Target:  5'- cGCCuCcUCCGCUCCUccagcagccauugggUCaGCagGGCCUCg -3'
miRNA:   3'- -CGGuGuAGGCGAGGG---------------AGcCG--CCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 63737 0.66 0.629474
Target:  5'- cGCCACAccUCCgGCg-CgUCGGCGGggcguCCUCg -3'
miRNA:   3'- -CGGUGU--AGG-CGagGgAGCCGCC-----GGAG- -5'
29638 3' -62.1 NC_006151.1 + 116087 0.66 0.629474
Target:  5'- aGCCGCcgCCGUcgUCCUCGucggcgauggcGCGGCgCUUg -3'
miRNA:   3'- -CGGUGuaGGCGa-GGGAGC-----------CGCCG-GAG- -5'
29638 3' -62.1 NC_006151.1 + 67052 0.66 0.629474
Target:  5'- cGCCACcgCCua--CCUgcUGGCGGCCUUc -3'
miRNA:   3'- -CGGUGuaGGcgagGGA--GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 78130 0.66 0.629474
Target:  5'- uGCgGCGggCCGCgggCgCCUCGGaCGacGCCUCg -3'
miRNA:   3'- -CGgUGUa-GGCGa--G-GGAGCC-GC--CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 84159 0.66 0.629474
Target:  5'- uGCCAgcUgCGCga-CUCGGCGcGCCUCc -3'
miRNA:   3'- -CGGUguAgGCGaggGAGCCGC-CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 104918 0.66 0.629474
Target:  5'- gGCgCGCGaCCGCgacggggCCCUCGaGCuGGCCa- -3'
miRNA:   3'- -CG-GUGUaGGCGa------GGGAGC-CG-CCGGag -5'
29638 3' -62.1 NC_006151.1 + 31210 0.66 0.629474
Target:  5'- cCCGCGUCCagGCcgggCCCcCGGCcGGCCg- -3'
miRNA:   3'- cGGUGUAGG--CGa---GGGaGCCG-CCGGag -5'
29638 3' -62.1 NC_006151.1 + 83664 0.66 0.629474
Target:  5'- gGCCGCGUCCucCUCgCUCaGGCuGCCg- -3'
miRNA:   3'- -CGGUGUAGGc-GAGgGAG-CCGcCGGag -5'
29638 3' -62.1 NC_006151.1 + 79760 0.66 0.619599
Target:  5'- cCCGCGgguccCCGgUCCa-CGGCGGCCg- -3'
miRNA:   3'- cGGUGUa----GGCgAGGgaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 52449 0.66 0.619599
Target:  5'- cGCCGCcgCCGUga---CGGCGGCCa- -3'
miRNA:   3'- -CGGUGuaGGCGagggaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 26574 0.66 0.619599
Target:  5'- aGCCcucucCGUCCGagccgUCCUCGGgGGgCUCa -3'
miRNA:   3'- -CGGu----GUAGGCga---GGGAGCCgCCgGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.