Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 119092 | 0.68 | 0.500771 |
Target: 5'- gGCCGCGg-CGCUCggcgcguacgugagCCgcgCGGcCGGCCUCg -3' miRNA: 3'- -CGGUGUagGCGAG--------------GGa--GCC-GCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 118886 | 0.69 | 0.466873 |
Target: 5'- cGCgGCGgcgaCGCggCCgC-CGGCGGCCUCg -3' miRNA: 3'- -CGgUGUag--GCGa-GG-GaGCCGCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 118337 | 0.67 | 0.570489 |
Target: 5'- cGCCGCGcCCGCcCUCUCG-CGcGCCUg -3' miRNA: 3'- -CGGUGUaGGCGaGGGAGCcGC-CGGAg -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 117871 | 0.79 | 0.112229 |
Target: 5'- cGUCGCGUUCGC-CCCUCGGCGccgacaccuccGCCUCu -3' miRNA: 3'- -CGGUGUAGGCGaGGGAGCCGC-----------CGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 116087 | 0.66 | 0.629474 |
Target: 5'- aGCCGCcgCCGUcgUCCUCGucggcgauggcGCGGCgCUUg -3' miRNA: 3'- -CGGUGuaGGCGa-GGGAGC-----------CGCCG-GAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 114146 | 0.69 | 0.42389 |
Target: 5'- aGCCGCGgcucgggcgcagcgaCCGCgcggCCCUCGuGCuGGCCUa -3' miRNA: 3'- -CGGUGUa--------------GGCGa---GGGAGC-CG-CCGGAg -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 113432 | 0.67 | 0.570489 |
Target: 5'- cGCUGCG-CCGCUUCCggcgCGGCGuGCUc- -3' miRNA: 3'- -CGGUGUaGGCGAGGGa---GCCGC-CGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 109931 | 0.78 | 0.130511 |
Target: 5'- cGCCGCcggCCuCUcCCCUgGGCGGCCUCg -3' miRNA: 3'- -CGGUGua-GGcGA-GGGAgCCGCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 109665 | 0.68 | 0.512939 |
Target: 5'- cGCCACcgCCGCcCCCUCaGCcGCUa- -3' miRNA: 3'- -CGGUGuaGGCGaGGGAGcCGcCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 109245 | 0.67 | 0.580255 |
Target: 5'- aGCCGCcgCgGuCUCCgCU-GGCGGCCcCg -3' miRNA: 3'- -CGGUGuaGgC-GAGG-GAgCCGCCGGaG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 108567 | 0.71 | 0.335909 |
Target: 5'- cCCGCGUCCGCguccUCCUCcGCcGCCUCg -3' miRNA: 3'- cGGUGUAGGCGa---GGGAGcCGcCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 107504 | 0.67 | 0.54146 |
Target: 5'- cGCCGCcgGUCgacccgcccaCGCUCCCgccguuggcccCGGCGGCCcCg -3' miRNA: 3'- -CGGUG--UAG----------GCGAGGGa----------GCCGCCGGaG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 106076 | 0.77 | 0.147807 |
Target: 5'- cGCCACcgCCGCgCCgacugggaCUCGGCGGCCa- -3' miRNA: 3'- -CGGUGuaGGCGaGG--------GAGCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 104918 | 0.66 | 0.629474 |
Target: 5'- gGCgCGCGaCCGCgacggggCCCUCGaGCuGGCCa- -3' miRNA: 3'- -CG-GUGUaGGCGa------GGGAGC-CG-CCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 104367 | 0.68 | 0.503568 |
Target: 5'- cGCCgACAcggagCCGCUCUCgCGGCuGGCC-Cg -3' miRNA: 3'- -CGG-UGUa----GGCGAGGGaGCCG-CCGGaG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 103799 | 0.73 | 0.245034 |
Target: 5'- cGCUGCAggCCGCgCUgUCGGCGGCCg- -3' miRNA: 3'- -CGGUGUa-GGCGaGGgAGCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 103253 | 0.72 | 0.314535 |
Target: 5'- cGgCACAUCCGCgCCaUgGGCGGCCa- -3' miRNA: 3'- -CgGUGUAGGCGaGGgAgCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 103183 | 0.67 | 0.54146 |
Target: 5'- cGCCAUggaCGCcgCCCU-GGCGGCCg- -3' miRNA: 3'- -CGGUGuagGCGa-GGGAgCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 102506 | 0.7 | 0.389803 |
Target: 5'- cGCCGCGgcgCgGgaCCC-CGGCGGCgUCu -3' miRNA: 3'- -CGGUGUa--GgCgaGGGaGCCGCCGgAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 101843 | 0.67 | 0.531889 |
Target: 5'- cGCCGCccCCGC-CCCggcaccCGGCGGCg-- -3' miRNA: 3'- -CGGUGuaGGCGaGGGa-----GCCGCCGgag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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