miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 5' -54.4 NC_006151.1 + 9043 0.65 0.962069
Target:  5'- cCGGGGcgccccgcgugcuCCGGGGgCGCCGGCcgGCCAUCc -3'
miRNA:   3'- aGCUCU-------------GGCUCUgGUGGUUG--UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 46950 0.65 0.962069
Target:  5'- cCGcGGACUGGGGCgACCcuguugcugcugcGGcCGCCGCCg -3'
miRNA:   3'- aGC-UCUGGCUCUGgUGG-------------UU-GUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 68094 0.65 0.961373
Target:  5'- cUCGAGGCuCGcgucgcccagcgucAGGCgCACgAGCucGCCGCCg -3'
miRNA:   3'- -AGCUCUG-GC--------------UCUG-GUGgUUG--UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 122382 0.66 0.960312
Target:  5'- aCGAGGCgCGccgcgggcgcgcgcuGGcggcgcucGCCGCCGuggACGCCGCCg -3'
miRNA:   3'- aGCUCUG-GC---------------UC--------UGGUGGU---UGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 36340 0.66 0.958866
Target:  5'- cUCcGGGCCccGGCCGCCGACcCCGgCa -3'
miRNA:   3'- -AGcUCUGGcuCUGGUGGUUGuGGUgG- -5'
29638 5' -54.4 NC_006151.1 + 58997 0.66 0.958866
Target:  5'- gCGAGAgCGcGGCguCCAGCggcgcgucgaaGCCGCCc -3'
miRNA:   3'- aGCUCUgGCuCUGguGGUUG-----------UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 80336 0.66 0.958866
Target:  5'- -gGGGACCGGGGCgagGgCGGCucuCCGCCc -3'
miRNA:   3'- agCUCUGGCUCUGg--UgGUUGu--GGUGG- -5'
29638 5' -54.4 NC_006151.1 + 86202 0.66 0.958866
Target:  5'- gCGGGcCCGcuGcCCAUCAACaucgACCACCg -3'
miRNA:   3'- aGCUCuGGCu-CuGGUGGUUG----UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 6234 0.66 0.958866
Target:  5'- gCGGcGCCGGGAgCC-CUGGCuGCCGCCg -3'
miRNA:   3'- aGCUcUGGCUCU-GGuGGUUG-UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 38422 0.66 0.958866
Target:  5'- cCGGcuCCGGGcCCuCCAGCcCCGCCa -3'
miRNA:   3'- aGCUcuGGCUCuGGuGGUUGuGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 57079 0.66 0.958866
Target:  5'- cCGGcGCCGcgcAGGCgCACgCAGCGCCGCg -3'
miRNA:   3'- aGCUcUGGC---UCUG-GUG-GUUGUGGUGg -5'
29638 5' -54.4 NC_006151.1 + 105230 0.66 0.958866
Target:  5'- gCGGcagcGGCUGAcGGCCGCCGAgGUCGCCu -3'
miRNA:   3'- aGCU----CUGGCU-CUGGUGGUUgUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 106671 0.66 0.958866
Target:  5'- gCGAGGCCGcggcgcucGGCgCGCCGgGCGCCGgCg -3'
miRNA:   3'- aGCUCUGGCu-------CUG-GUGGU-UGUGGUgG- -5'
29638 5' -54.4 NC_006151.1 + 113976 0.66 0.958866
Target:  5'- cUCG-GACgaGGuGACCACCGuGCGCgGCCu -3'
miRNA:   3'- -AGCuCUGg-CU-CUGGUGGU-UGUGgUGG- -5'
29638 5' -54.4 NC_006151.1 + 105540 0.66 0.958866
Target:  5'- aUCGGGcCCGAGcuGCgGCaCGACGCC-CUg -3'
miRNA:   3'- -AGCUCuGGCUC--UGgUG-GUUGUGGuGG- -5'
29638 5' -54.4 NC_006151.1 + 118095 0.66 0.958499
Target:  5'- aUCGAGgcgcugcGCCGcGACCuGCUGGCGCUGCUc -3'
miRNA:   3'- -AGCUC-------UGGCuCUGG-UGGUUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 123551 0.66 0.958499
Target:  5'- gCGAGuuccgcggcuucuACCGcuuccAGACgGCCGGCguaACCGCCa -3'
miRNA:   3'- aGCUC-------------UGGC-----UCUGgUGGUUG---UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 52918 0.66 0.955095
Target:  5'- cCGGGAgCGugaAGACCACaAACugCGCg -3'
miRNA:   3'- aGCUCUgGC---UCUGGUGgUUGugGUGg -5'
29638 5' -54.4 NC_006151.1 + 39879 0.66 0.955095
Target:  5'- cCGAGggccugccgGCCGAGuuGCgCGCCuuCugCGCCg -3'
miRNA:   3'- aGCUC---------UGGCUC--UG-GUGGuuGugGUGG- -5'
29638 5' -54.4 NC_006151.1 + 22725 0.66 0.955095
Target:  5'- cUCGGucucGACCGAGAgC-UgGAgGCCGCCg -3'
miRNA:   3'- -AGCU----CUGGCUCUgGuGgUUgUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.