miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 123244 0.66 0.845165
Target:  5'- -cGGCGCgCGUUCUGCgAG--GCCgCCg -3'
miRNA:   3'- gaCUGCG-GCAAGAUGgUCguCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 4691 0.66 0.845165
Target:  5'- -gGACaugGCC--UC-GCCGGCGGCCCCg -3'
miRNA:   3'- gaCUG---CGGcaAGaUGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 83549 0.66 0.845165
Target:  5'- -aGACGaCCGUcaUCU-CgGGCGGgCCCUCg -3'
miRNA:   3'- gaCUGC-GGCA--AGAuGgUCGUC-GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 135927 0.66 0.845165
Target:  5'- --uGCGCgCGcUCUGCCgcgGGgAGCCCCUc -3'
miRNA:   3'- gacUGCG-GCaAGAUGG---UCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 33196 0.66 0.845165
Target:  5'- -gGAUgGCCG----GCCGGC-GCCCCCg -3'
miRNA:   3'- gaCUG-CGGCaagaUGGUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 50340 0.66 0.845165
Target:  5'- -cGGCGCCug---GCC-GCGGCCuCCCg -3'
miRNA:   3'- gaCUGCGGcaagaUGGuCGUCGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 3487 0.66 0.83711
Target:  5'- -gGGCGCCGga--GCCGGUcGUCCUCg -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 50878 0.66 0.83711
Target:  5'- -gGACcCCGUccCgggGCCGGCcgcGCCCCCc -3'
miRNA:   3'- gaCUGcGGCAa-Ga--UGGUCGu--CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 73101 0.66 0.83711
Target:  5'- ---uCGCCGUgcacCUcGCCGGCGGCgCgCCCg -3'
miRNA:   3'- gacuGCGGCAa---GA-UGGUCGUCG-G-GGG- -5'
29639 3' -57.8 NC_006151.1 + 122074 0.66 0.83711
Target:  5'- -cGACGCCGagaacCUGCUcaAGCAGCUCa- -3'
miRNA:   3'- gaCUGCGGCaa---GAUGG--UCGUCGGGgg -5'
29639 3' -57.8 NC_006151.1 + 21640 0.66 0.83711
Target:  5'- ----gGCCGUUCUugcgguACCAGUAGUUCaCCa -3'
miRNA:   3'- gacugCGGCAAGA------UGGUCGUCGGG-GG- -5'
29639 3' -57.8 NC_006151.1 + 90014 0.66 0.83711
Target:  5'- -cGACGuuGUUCgugGCgcacgugaCGGcCAGCCCCa -3'
miRNA:   3'- gaCUGCggCAAGa--UG--------GUC-GUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 109817 0.66 0.83711
Target:  5'- -cGGCcCCGcgCUccccGCUGGCGGaCCCCCa -3'
miRNA:   3'- gaCUGcGGCaaGA----UGGUCGUC-GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 99849 0.66 0.83711
Target:  5'- -cGACGCCuacaaCUGCCuccuGaCGGCCUCCu -3'
miRNA:   3'- gaCUGCGGcaa--GAUGGu---C-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 18717 0.66 0.834657
Target:  5'- gUGACGCCGUccacguagaucgcgUCgucGCCGccGCcggGGCCCCa -3'
miRNA:   3'- gACUGCGGCA--------------AGa--UGGU--CG---UCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 122970 0.66 0.830534
Target:  5'- -gGACGCCGgcgacgggggcgUCggcgacgaagacggGcCCGGCGcGCCCCCg -3'
miRNA:   3'- gaCUGCGGCa-----------AGa-------------U-GGUCGU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 21867 0.66 0.829704
Target:  5'- -aGGCGCCGguaCUggcccucguugaaccGCCccggagccaccaugAGCAGCCCCa -3'
miRNA:   3'- gaCUGCGGCaa-GA---------------UGG--------------UCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 51658 0.66 0.828872
Target:  5'- gCUGAUGCCGUUgU-CCcGCucgGGCUCCUc -3'
miRNA:   3'- -GACUGCGGCAAgAuGGuCG---UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 50840 0.66 0.828872
Target:  5'- -cGcCGCCGUcCccUCGGCGGCCgCCCu -3'
miRNA:   3'- gaCuGCGGCAaGauGGUCGUCGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 105560 0.66 0.828872
Target:  5'- -cGACGCCcugCgcgcGCUGGCGGCCgCCu -3'
miRNA:   3'- gaCUGCGGcaaGa---UGGUCGUCGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.