miRNA display CGI


Results 21 - 40 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 119467 0.79 0.18588
Target:  5'- -gGACGCCGUgcgCUacgugGCCGGCAGCCUCg -3'
miRNA:   3'- gaCUGCGGCAa--GA-----UGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 118965 0.69 0.647525
Target:  5'- -aGGCGCuCGUcgCcGCCGGCguguacgacgaggAGCCCCCc -3'
miRNA:   3'- gaCUGCG-GCAa-GaUGGUCG-------------UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 118894 0.67 0.776033
Target:  5'- -cGACGCgGcc--GCCGGCGGCCUCg -3'
miRNA:   3'- gaCUGCGgCaagaUGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 112710 0.66 0.811877
Target:  5'- -cGGCGCUGUgcgCcaagGCCcuGGCcuGCCCCCc -3'
miRNA:   3'- gaCUGCGGCAa--Ga---UGG--UCGu-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 111382 0.67 0.794242
Target:  5'- ---uCGCCGUcgUCgccgccGCCGGCA-CCCCCg -3'
miRNA:   3'- gacuGCGGCA--AGa-----UGGUCGUcGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 109817 0.66 0.83711
Target:  5'- -cGGCcCCGcgCUccccGCUGGCGGaCCCCCa -3'
miRNA:   3'- gaCUGcGGCaaGA----UGGUCGUC-GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 109516 0.68 0.708788
Target:  5'- gCUGcCGCCGcagccgUCU--CAGCAGCgCCCCc -3'
miRNA:   3'- -GACuGCGGCa-----AGAugGUCGUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 109464 0.74 0.391526
Target:  5'- -cGACGCCGgagCggcACgGGgAGCCCCCg -3'
miRNA:   3'- gaCUGCGGCaa-Ga--UGgUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 109245 0.71 0.528188
Target:  5'- -aGcCGCCGcggUCUccGCUGGCGGCCCCg -3'
miRNA:   3'- gaCuGCGGCa--AGA--UGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 107706 0.7 0.608001
Target:  5'- -cGcCGCCGgcaccaagGCCGccGCGGCCCCCa -3'
miRNA:   3'- gaCuGCGGCaaga----UGGU--CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 107530 0.7 0.577756
Target:  5'- ---cCGCCGUUggccCCGGCGGCCCCg -3'
miRNA:   3'- gacuGCGGCAAgau-GGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 107475 0.7 0.618127
Target:  5'- -gGugGCCagcgcgCUGCC-GCuGCCCCCg -3'
miRNA:   3'- gaCugCGGcaa---GAUGGuCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 107348 0.69 0.638404
Target:  5'- -cGACGCCcacccgGCCcGCGGCCCCg -3'
miRNA:   3'- gaCUGCGGcaaga-UGGuCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 107024 0.67 0.776033
Target:  5'- -cGGCGCUGaUC-GCgGcGCGGCCCCUg -3'
miRNA:   3'- gaCUGCGGCaAGaUGgU-CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 106998 0.68 0.698855
Target:  5'- cCUGGCGCCGca--GCUggAGCGGCUCUCg -3'
miRNA:   3'- -GACUGCGGCaagaUGG--UCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 106885 0.66 0.811877
Target:  5'- gUGACGCUGUgcgACCuGCGcGaCCCCg -3'
miRNA:   3'- gACUGCGGCAagaUGGuCGU-CgGGGG- -5'
29639 3' -57.8 NC_006151.1 + 105560 0.66 0.828872
Target:  5'- -cGACGCCcugCgcgcGCUGGCGGCCgCCu -3'
miRNA:   3'- gaCUGCGGcaaGa---UGGUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 105392 0.75 0.359136
Target:  5'- -cGACGCCG-UCUACCcGCGccuGCCCgCCa -3'
miRNA:   3'- gaCUGCGGCaAGAUGGuCGU---CGGG-GG- -5'
29639 3' -57.8 NC_006151.1 + 104727 0.67 0.794242
Target:  5'- -cGGCGCCGUgacCUACCuGgAGCgCUUCg -3'
miRNA:   3'- gaCUGCGGCAa--GAUGGuCgUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 103189 0.72 0.499205
Target:  5'- -gGACGCCGccCUGgCGGCcGCCCCg -3'
miRNA:   3'- gaCUGCGGCaaGAUgGUCGuCGGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.