miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 139892 0.66 0.779356
Target:  5'- cCCGcCCCGUGUUCaaCGACGgcuuCCgCGCCGc -3'
miRNA:   3'- -GGC-GGGCGUAAG--GCUGUac--GG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 56638 0.66 0.779356
Target:  5'- aCGCCCGagauggCCGAggcCGUGUaCCGCUGg -3'
miRNA:   3'- gGCGGGCguaa--GGCU---GUACG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 67688 0.66 0.779356
Target:  5'- cUCGCgCGCAgcUCCcGCuUGUCCGCCu -3'
miRNA:   3'- -GGCGgGCGUa-AGGcUGuACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 92622 0.66 0.779356
Target:  5'- gCCuCCCGCugccCCGACAucaUGCgcgaCGCCGg -3'
miRNA:   3'- -GGcGGGCGuaa-GGCUGU---ACGg---GCGGC- -5'
29640 3' -60 NC_006151.1 + 113366 0.66 0.779356
Target:  5'- gCCGCaaCCGCAcgCaCGGCgaGUGCCUGCUc -3'
miRNA:   3'- -GGCG--GGCGUaaG-GCUG--UACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 121030 0.66 0.779356
Target:  5'- aCCGCaCGCGgcacuuugugCUGGCcUGCCCGCgCGu -3'
miRNA:   3'- -GGCGgGCGUaa--------GGCUGuACGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 2960 0.66 0.779356
Target:  5'- gCGCCgGCGaagCCGAgGUcCCgCGCCGa -3'
miRNA:   3'- gGCGGgCGUaa-GGCUgUAcGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 56536 0.66 0.779356
Target:  5'- gCCG-CCGgGUUCgGGCcccugcucgGCCUGCCGg -3'
miRNA:   3'- -GGCgGGCgUAAGgCUGua-------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 100066 0.66 0.779356
Target:  5'- gUGCgCGCGgccgCCGAgGUGCUcgaggCGCCGg -3'
miRNA:   3'- gGCGgGCGUaa--GGCUgUACGG-----GCGGC- -5'
29640 3' -60 NC_006151.1 + 50334 0.66 0.779356
Target:  5'- gCCGCCCgGCGccuggCCG-CGgccuCCCGCCGc -3'
miRNA:   3'- -GGCGGG-CGUaa---GGCuGUac--GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 101885 0.66 0.778459
Target:  5'- gCCGCCgCGgGUccagaagcggCCGAgCAUGCCCaagcggcGCCGg -3'
miRNA:   3'- -GGCGG-GCgUAa---------GGCU-GUACGGG-------CGGC- -5'
29640 3' -60 NC_006151.1 + 55424 0.66 0.770331
Target:  5'- gCGCCgCGCAggcgggcgCgGACGggaccgGCgCCGCCGg -3'
miRNA:   3'- gGCGG-GCGUaa------GgCUGUa-----CG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 49341 0.66 0.770331
Target:  5'- -gGCCUGCGcgCCgGACccGCgCCGCCa -3'
miRNA:   3'- ggCGGGCGUaaGG-CUGuaCG-GGCGGc -5'
29640 3' -60 NC_006151.1 + 91791 0.66 0.770331
Target:  5'- aCCGCCCgGCuuauaugCgCGGgAUGcCCCGCCc -3'
miRNA:   3'- -GGCGGG-CGuaa----G-GCUgUAC-GGGCGGc -5'
29640 3' -60 NC_006151.1 + 77173 0.66 0.770331
Target:  5'- gCGUCCGCcg-CCG-CGUccacGUCCGCCGc -3'
miRNA:   3'- gGCGGGCGuaaGGCuGUA----CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 49578 0.66 0.770331
Target:  5'- -aGCCCGCGcucgCCGGC--GCCCcgGCCa -3'
miRNA:   3'- ggCGGGCGUaa--GGCUGuaCGGG--CGGc -5'
29640 3' -60 NC_006151.1 + 93066 0.66 0.769422
Target:  5'- uCCGUCCGCGggcUCCGucuCAccucUGCcguccccCCGCCGu -3'
miRNA:   3'- -GGCGGGCGUa--AGGCu--GU----ACG-------GGCGGC- -5'
29640 3' -60 NC_006151.1 + 50809 0.66 0.769422
Target:  5'- cCCGCCagCGCAgcgUCCacgccucGGCccGCgCCGCCGu -3'
miRNA:   3'- -GGCGG--GCGUa--AGG-------CUGuaCG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 39681 0.66 0.76486
Target:  5'- aCCGCCagCGCGUgcuccccaCCguggacggcugcaagGACAUgGCCCGCCa -3'
miRNA:   3'- -GGCGG--GCGUAa-------GG---------------CUGUA-CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 18534 0.66 0.76211
Target:  5'- cCCGCCCGCGUcggcacccggaacggCCG-CGaGgCCGCCc -3'
miRNA:   3'- -GGCGGGCGUAa--------------GGCuGUaCgGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.