miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 5' -55 NC_006151.1 + 102679 0.65 0.950253
Target:  5'- -aCGcCGUGGACGCGgg-GGCgCCCGGc -3'
miRNA:   3'- cgGCuGUACCUGUGCaagCUG-GGGUC- -5'
29640 5' -55 NC_006151.1 + 39544 0.65 0.950253
Target:  5'- cGCCcGCGUGGAgGCcuccUUCGcccgccugcACCCCGGg -3'
miRNA:   3'- -CGGcUGUACCUgUGc---AAGC---------UGGGGUC- -5'
29640 5' -55 NC_006151.1 + 137744 0.65 0.950253
Target:  5'- gGCCGGCGccGACACGguccgCGGCCUg-- -3'
miRNA:   3'- -CGGCUGUacCUGUGCaa---GCUGGGguc -5'
29640 5' -55 NC_006151.1 + 4216 0.65 0.950253
Target:  5'- gGgCGGCcgGGGCGCGggCGGgCgCGGg -3'
miRNA:   3'- -CgGCUGuaCCUGUGCaaGCUgGgGUC- -5'
29640 5' -55 NC_006151.1 + 122319 0.65 0.950253
Target:  5'- aGCUGGCGgu-GCGCGUg-GACCCCGa -3'
miRNA:   3'- -CGGCUGUaccUGUGCAagCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 117322 0.66 0.945991
Target:  5'- cGCCGA---GGGCgGCG-UCGGCCUCGGc -3'
miRNA:   3'- -CGGCUguaCCUG-UGCaAGCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 99723 0.66 0.945991
Target:  5'- cGCCGACGagcGcGGCGCucgUCGACCUCGc -3'
miRNA:   3'- -CGGCUGUa--C-CUGUGca-AGCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 103627 0.66 0.945991
Target:  5'- cGCCGACGcGGugGCGg-CGGCgCUGGc -3'
miRNA:   3'- -CGGCUGUaCCugUGCaaGCUGgGGUC- -5'
29640 5' -55 NC_006151.1 + 86261 0.66 0.945991
Target:  5'- gGCCGugGUcGACgACGaccgCGGCCCCu- -3'
miRNA:   3'- -CGGCugUAcCUG-UGCaa--GCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 31961 0.66 0.945991
Target:  5'- cGCCGg---GGACGCGggaCGugCCCGc -3'
miRNA:   3'- -CGGCuguaCCUGUGCaa-GCugGGGUc -5'
29640 5' -55 NC_006151.1 + 104367 0.66 0.941496
Target:  5'- cGCCGACAcGGAgccgcucuCGCGgcUGGCCCgCAu -3'
miRNA:   3'- -CGGCUGUaCCU--------GUGCaaGCUGGG-GUc -5'
29640 5' -55 NC_006151.1 + 87877 0.66 0.941496
Target:  5'- uUCGACGUGGggggggaacGCGCGgggcgucaCGGCCCCGc -3'
miRNA:   3'- cGGCUGUACC---------UGUGCaa------GCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 97484 0.66 0.941496
Target:  5'- cGCC-ACGUGGACGCGcagCG-CCUCGc -3'
miRNA:   3'- -CGGcUGUACCUGUGCaa-GCuGGGGUc -5'
29640 5' -55 NC_006151.1 + 49921 0.66 0.941033
Target:  5'- cGCCGGCGgcugacGGACACGauccgccgggaccUggccgCGGCCCUGGc -3'
miRNA:   3'- -CGGCUGUa-----CCUGUGC-------------Aa----GCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 110203 0.66 0.936764
Target:  5'- cGCCGccuGCggGaGACGCGgaCGACCCUcaAGg -3'
miRNA:   3'- -CGGC---UGuaC-CUGUGCaaGCUGGGG--UC- -5'
29640 5' -55 NC_006151.1 + 140461 0.66 0.936764
Target:  5'- gGCgGGauCAUGGACGCGcUgGACuCCCAc -3'
miRNA:   3'- -CGgCU--GUACCUGUGCaAgCUG-GGGUc -5'
29640 5' -55 NC_006151.1 + 137601 0.66 0.936764
Target:  5'- gGUCGGgAUcggGGGCGCGggCGgggACCCCGGc -3'
miRNA:   3'- -CGGCUgUA---CCUGUGCaaGC---UGGGGUC- -5'
29640 5' -55 NC_006151.1 + 93746 0.66 0.936764
Target:  5'- uGCgGGCcucgucgGGGCGCGgggCGucCCCCAGg -3'
miRNA:   3'- -CGgCUGua-----CCUGUGCaa-GCu-GGGGUC- -5'
29640 5' -55 NC_006151.1 + 64215 0.66 0.936764
Target:  5'- uCCGGCGUGGGCGCc-UCGGCguaCAGg -3'
miRNA:   3'- cGGCUGUACCUGUGcaAGCUGgg-GUC- -5'
29640 5' -55 NC_006151.1 + 108765 0.66 0.93579
Target:  5'- aGCCGugGagaucaaccucgGGACAUcuccccgCGGCCCCAGu -3'
miRNA:   3'- -CGGCugUa-----------CCUGUGcaa----GCUGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.