miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 3' -51.8 NC_006151.1 + 105097 0.66 0.9889
Target:  5'- aGUggCUGCAccaggcgcggcUCAUCAUCGAcACGCACc -3'
miRNA:   3'- gCAa-GAUGU-----------AGUGGUGGCUcUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 68855 0.66 0.987396
Target:  5'- cCGcgCgacGCGUCcagcAgCGCCGGGGCGCGCc -3'
miRNA:   3'- -GCaaGa--UGUAG----UgGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 2126 0.66 0.987396
Target:  5'- ------cCGUCGCCGCCGcGGACGC-Cg -3'
miRNA:   3'- gcaagauGUAGUGGUGGC-UCUGCGuG- -5'
29641 3' -51.8 NC_006151.1 + 114132 0.66 0.987396
Target:  5'- ----gUGCGcCGCCGCCGAGcCGCGg -3'
miRNA:   3'- gcaagAUGUaGUGGUGGCUCuGCGUg -5'
29641 3' -51.8 NC_006151.1 + 138199 0.66 0.987396
Target:  5'- cCGUgCUGCggCACC-UCGAcGCGCACu -3'
miRNA:   3'- -GCAaGAUGuaGUGGuGGCUcUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 103044 0.66 0.985739
Target:  5'- gGUUC-GCG-CugCugGCCGAGGCGCAg -3'
miRNA:   3'- gCAAGaUGUaGugG--UGGCUCUGCGUg -5'
29641 3' -51.8 NC_006151.1 + 18864 0.66 0.985739
Target:  5'- cCGUUgUGgGUCAUCA-CGAGcACGUACa -3'
miRNA:   3'- -GCAAgAUgUAGUGGUgGCUC-UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 70897 0.66 0.98392
Target:  5'- gCGcgCUGCGUCgugcGCUGCCu-GGCGCGCg -3'
miRNA:   3'- -GCaaGAUGUAG----UGGUGGcuCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 59661 0.66 0.98392
Target:  5'- ---gCUGCGcagCGCCuCgGGGACGCGCg -3'
miRNA:   3'- gcaaGAUGUa--GUGGuGgCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 129378 0.66 0.98392
Target:  5'- gGUUCcgGCAcgccCACCAgcuCUGGGugGCGCg -3'
miRNA:   3'- gCAAGa-UGUa---GUGGU---GGCUCugCGUG- -5'
29641 3' -51.8 NC_006151.1 + 48834 0.66 0.98392
Target:  5'- aGUUCgACGUgGCCcccUCGuGGCGCGCg -3'
miRNA:   3'- gCAAGaUGUAgUGGu--GGCuCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 78029 0.66 0.98392
Target:  5'- gGUgcgCUACAUC-CCGgCGAcgcGGCGCAUc -3'
miRNA:   3'- gCAa--GAUGUAGuGGUgGCU---CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 94922 0.66 0.98392
Target:  5'- gCGUUgUACA-CGCCGugcuCCGcgaugcGGACGCGCa -3'
miRNA:   3'- -GCAAgAUGUaGUGGU----GGC------UCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 138605 0.66 0.98392
Target:  5'- gCGgcgCUGCcgCucggcgaggacGCCGCCgGGGGCGCGCc -3'
miRNA:   3'- -GCaa-GAUGuaG-----------UGGUGG-CUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 104648 0.66 0.981931
Target:  5'- aCGUgc-GCGcgGCCGCCGAcgcGGCGCGCg -3'
miRNA:   3'- -GCAagaUGUagUGGUGGCU---CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 97191 0.66 0.981931
Target:  5'- aCGcgCU-CGaCGgUGCCGAGGCGCACg -3'
miRNA:   3'- -GCaaGAuGUaGUgGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 81585 0.66 0.981931
Target:  5'- --gUCUcgcgcGCGUCGCCgggGCCGccGGCGCGCa -3'
miRNA:   3'- gcaAGA-----UGUAGUGG---UGGCu-CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 65572 0.66 0.981931
Target:  5'- gCG-UCUuCAcgGCCACCGAGcCGUACa -3'
miRNA:   3'- -GCaAGAuGUagUGGUGGCUCuGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 96204 0.66 0.979076
Target:  5'- gGggCgccGCGUCGCCguggcggcggccgcGgCGAGGCGCACa -3'
miRNA:   3'- gCaaGa--UGUAGUGG--------------UgGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 121186 0.67 0.977406
Target:  5'- cCGUgCUGCA-CG-CGCuCGGGGCGCGCa -3'
miRNA:   3'- -GCAaGAUGUaGUgGUG-GCUCUGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.