miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 37370 0.66 0.41746
Target:  5'- cCGGCuccgaCCCUCCGGCcGACGGCcgCGu- -3'
miRNA:   3'- -GCCGc----GGGGGGCCGcCUGCCGa-GCuu -5'
29641 5' -67.3 NC_006151.1 + 134997 0.66 0.41746
Target:  5'- gGGCGCgUCuuGGCGGG-GGCgCGGGg -3'
miRNA:   3'- gCCGCGgGGggCCGCCUgCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 112042 0.66 0.41746
Target:  5'- uGGgGCCggCgGGCGGGCGGCggCGGu -3'
miRNA:   3'- gCCgCGGggGgCCGCCUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 90710 0.66 0.41746
Target:  5'- -cGCGCCCgCCCcGCaGGCGGCggCGAc -3'
miRNA:   3'- gcCGCGGG-GGGcCGcCUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 31327 0.66 0.41746
Target:  5'- aCGcGCGCCCaCCCucGGCGccGugGGCcCGAc -3'
miRNA:   3'- -GC-CGCGGG-GGG--CCGC--CugCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 107380 0.66 0.41746
Target:  5'- gGGCuGCCCCCCgaguuGGCGGGgGaGgaCGAc -3'
miRNA:   3'- gCCG-CGGGGGG-----CCGCCUgC-CgaGCUu -5'
29641 5' -67.3 NC_006151.1 + 54181 0.66 0.41746
Target:  5'- gGGCGCCCCCUcGCGGAUc-CUCa-- -3'
miRNA:   3'- gCCGCGGGGGGcCGCCUGccGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 127727 0.66 0.41746
Target:  5'- cCGGCGUCCCCgucGCGGGCGGgaacCGGu -3'
miRNA:   3'- -GCCGCGGGGGgc-CGCCUGCCga--GCUu -5'
29641 5' -67.3 NC_006151.1 + 55061 0.66 0.409341
Target:  5'- uCGGCGaggaCCCGGCGGGCucGGCcgCGGc -3'
miRNA:   3'- -GCCGCggg-GGGCCGCCUG--CCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 133392 0.66 0.409341
Target:  5'- gCGGCGgCCggggCCGaGCGGGCGGuCUUGGc -3'
miRNA:   3'- -GCCGCgGGg---GGC-CGCCUGCC-GAGCUu -5'
29641 5' -67.3 NC_006151.1 + 100102 0.66 0.401322
Target:  5'- cCGGCGCCgCCCUcGCuGGCGGCcagcgccuuccUCGGGg -3'
miRNA:   3'- -GCCGCGG-GGGGcCGcCUGCCG-----------AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 39688 0.66 0.401322
Target:  5'- gCGcGUGCUCCCCaccGUGGACGGCUg--- -3'
miRNA:   3'- -GC-CGCGGGGGGc--CGCCUGCCGAgcuu -5'
29641 5' -67.3 NC_006151.1 + 19283 0.66 0.401322
Target:  5'- gCGGgGCCCaCCGgggccagcggcGCGGGCGGC-CGGu -3'
miRNA:   3'- -GCCgCGGGgGGC-----------CGCCUGCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 36387 0.66 0.401322
Target:  5'- cCGGgGCCCCCggCGGCcccGGGC-GCUCGu- -3'
miRNA:   3'- -GCCgCGGGGG--GCCG---CCUGcCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 36717 0.66 0.401322
Target:  5'- ---aGCCCgCCGccGCGaGGCGGCUCGAu -3'
miRNA:   3'- gccgCGGGgGGC--CGC-CUGCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 49215 0.66 0.396558
Target:  5'- gCGGCGCggggUCCCCGGCucccacgccccgcucGGcugggcGCGGCUCGu- -3'
miRNA:   3'- -GCCGCG----GGGGGCCG---------------CC------UGCCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 107344 0.66 0.393403
Target:  5'- uCGGCgacGCCCaCCCGGCccGCGGCccCGAu -3'
miRNA:   3'- -GCCG---CGGG-GGGCCGccUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 86567 0.66 0.393403
Target:  5'- cCGGCaGCUCUCgGcGCGGGCGcGCUcCGAGc -3'
miRNA:   3'- -GCCG-CGGGGGgC-CGCCUGC-CGA-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 107436 0.66 0.393403
Target:  5'- uGGCGCCaaCCCgUGGCuGGACcuGCUCGGc -3'
miRNA:   3'- gCCGCGG--GGG-GCCG-CCUGc-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 39984 0.66 0.393403
Target:  5'- gGGCGCCCCgCCGGCcgugcucugGGACuuuGCccccuUCGAGa -3'
miRNA:   3'- gCCGCGGGG-GGCCG---------CCUGc--CG-----AGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.