miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 5' -63.8 NC_006151.1 + 134726 0.65 0.61223
Target:  5'- gUGGCCuucgcGCGGGacuuugucgccccGAGcAGcGCGCGCGGGg -3'
miRNA:   3'- -ACUGGc----CGCCC-------------CUC-UCcUGCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 113047 0.66 0.603589
Target:  5'- -uGCgCGGCGGcGGAgcgcGAGGACGaCGCGu- -3'
miRNA:   3'- acUG-GCCGCC-CCU----CUCCUGC-GCGCcc -5'
29642 5' -63.8 NC_006151.1 + 46052 0.66 0.603589
Target:  5'- aUGAgCCGGUaGGGGGGGGcuuCGCGgucaucUGGGg -3'
miRNA:   3'- -ACU-GGCCGcCCCUCUCCu--GCGC------GCCC- -5'
29642 5' -63.8 NC_006151.1 + 9321 0.66 0.603589
Target:  5'- cGGCaccacaGGCGGGaGcGGGGuCGCuCGGGg -3'
miRNA:   3'- aCUGg-----CCGCCC-CuCUCCuGCGcGCCC- -5'
29642 5' -63.8 NC_006151.1 + 20614 0.66 0.60263
Target:  5'- cGACgGcGUGGGGugguGGGGGCGCccccuggGCGGc -3'
miRNA:   3'- aCUGgC-CGCCCCu---CUCCUGCG-------CGCCc -5'
29642 5' -63.8 NC_006151.1 + 3496 0.66 0.60263
Target:  5'- -aGCCGGUcguccucggaggaGGaGGAggagGAGGACagcaGCGCGGGa -3'
miRNA:   3'- acUGGCCG-------------CC-CCU----CUCCUG----CGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 64848 0.66 0.60263
Target:  5'- --cCCGGCGaGGGccucggcGGAGGGCcGCugcccgGCGGGa -3'
miRNA:   3'- acuGGCCGC-CCC-------UCUCCUG-CG------CGCCC- -5'
29642 5' -63.8 NC_006151.1 + 2424 0.66 0.60263
Target:  5'- --cCCGGCGGccgcaGGAGAcgaagacGGGcCGCaGCGGGg -3'
miRNA:   3'- acuGGCCGCC-----CCUCU-------CCU-GCG-CGCCC- -5'
29642 5' -63.8 NC_006151.1 + 27485 0.66 0.594006
Target:  5'- gGGUCGGCGGGGuGguGGGAacgGgGUGGGa -3'
miRNA:   3'- aCUGGCCGCCCCuC--UCCUg--CgCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 28541 0.66 0.594006
Target:  5'- gGACCGGCcaaugGGGGAGccGugccCGCGUcccGGGa -3'
miRNA:   3'- aCUGGCCG-----CCCCUCucCu---GCGCG---CCC- -5'
29642 5' -63.8 NC_006151.1 + 45315 0.66 0.594006
Target:  5'- aGGCCgggaGGCuGGGAG-GGugGCGguggaggaCGGGa -3'
miRNA:   3'- aCUGG----CCGcCCCUCuCCugCGC--------GCCC- -5'
29642 5' -63.8 NC_006151.1 + 23867 0.66 0.594006
Target:  5'- --cCCGGUGGcguuGGcGGGGGCGaGCGGGu -3'
miRNA:   3'- acuGGCCGCC----CCuCUCCUGCgCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 122952 0.66 0.594006
Target:  5'- cGGCgCcGCGGGGGGcgcGGACGCcggcgaCGGGg -3'
miRNA:   3'- aCUG-GcCGCCCCUCu--CCUGCGc-----GCCC- -5'
29642 5' -63.8 NC_006151.1 + 15793 0.66 0.584448
Target:  5'- gGACgaGGaaGGG-GAGGACGgGgGGGa -3'
miRNA:   3'- aCUGg-CCgcCCCuCUCCUGCgCgCCC- -5'
29642 5' -63.8 NC_006151.1 + 32785 0.66 0.584448
Target:  5'- cGGCC-GCGGGGGGccgaagcGGACGCggaagaagacGCGGa -3'
miRNA:   3'- aCUGGcCGCCCCUCu------CCUGCG----------CGCCc -5'
29642 5' -63.8 NC_006151.1 + 49762 0.66 0.584448
Target:  5'- gGAagaCGGCGaGGAGGGGAagGCGaCGGa -3'
miRNA:   3'- aCUg--GCCGCcCCUCUCCUg-CGC-GCCc -5'
29642 5' -63.8 NC_006151.1 + 130265 0.66 0.584448
Target:  5'- aGGCCGGCGcGcGGccccGAGG-C-CGCGGGc -3'
miRNA:   3'- aCUGGCCGC-C-CCu---CUCCuGcGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 21311 0.66 0.584448
Target:  5'- cGAgCGGUGGcGcGAGAcgcccGGCGCGgCGGGg -3'
miRNA:   3'- aCUgGCCGCC-C-CUCUc----CUGCGC-GCCC- -5'
29642 5' -63.8 NC_006151.1 + 140443 0.66 0.584448
Target:  5'- gUGcCCGGCGccugccucggcGGGAucauGGACGCGCuGGa -3'
miRNA:   3'- -ACuGGCCGC-----------CCCUcu--CCUGCGCGcCC- -5'
29642 5' -63.8 NC_006151.1 + 10914 0.66 0.583494
Target:  5'- gGACCGGgguCGGGcccacggcgccgaGGGuGGGCGCGCGu- -3'
miRNA:   3'- aCUGGCC---GCCC-------------CUCuCCUGCGCGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.