Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29645 | 5' | -42.5 | NC_006151.1 | + | 56585 | 0.66 | 1 |
Target: 5'- ---------cCGACGggcuGGUGCGGACGCg -3' miRNA: 3'- uagaauauauGUUGU----UCACGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 29016 | 1.12 | 0.038161 |
Target: 5'- uAUCUUAUAUACAACAAGUGCGAACGCu -3' miRNA: 3'- -UAGAAUAUAUGUUGUUCACGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 28737 | 1.03 | 0.118977 |
Target: 5'- uAUCUUAUAUACcGCAAGUGCGAACGCu -3' miRNA: 3'- -UAGAAUAUAUGuUGUUCACGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 28458 | 1.03 | 0.118977 |
Target: 5'- uAUCUUAUAUACcGCAAGUGCGAACGCu -3' miRNA: 3'- -UAGAAUAUAUGuUGUUCACGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 22818 | 0.7 | 0.999945 |
Target: 5'- cGUCag--GUGCAgggggcGCGAG-GCGAGCGCg -3' miRNA: 3'- -UAGaauaUAUGU------UGUUCaCGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 22035 | 0.72 | 0.999624 |
Target: 5'- ------aGUACAGCAGGUGC--GCGCa -3' miRNA: 3'- uagaauaUAUGUUGUUCACGcuUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 13834 | 0.74 | 0.99787 |
Target: 5'- ---aUAUAUuaGCAAUuGGUGCGAACGUg -3' miRNA: 3'- uagaAUAUA--UGUUGuUCACGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 13555 | 0.74 | 0.99787 |
Target: 5'- ---aUAUAUuaGCAAUuGGUGCGAACGUg -3' miRNA: 3'- uagaAUAUA--UGUUGuUCACGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 13276 | 0.71 | 0.999925 |
Target: 5'- ----cAUAUuaGCAAUuGGUGCGAACGUg -3' miRNA: 3'- uagaaUAUA--UGUUGuUCACGCUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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