miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 3' -55.4 NC_006151.1 + 131118 0.66 0.94133
Target:  5'- gGCCGcggCgCGGGAGg--CCGcGGcGCCGCg -3'
miRNA:   3'- -UGGCa--GgGCCUUUaaaGGC-CC-UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 79680 0.66 0.94133
Target:  5'- gAUCGUCgCCGccg----CgGGGACCGCa -3'
miRNA:   3'- -UGGCAG-GGCcuuuaaaGgCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 7741 0.66 0.94133
Target:  5'- cCCGaaCCGGGAAgcgacgCCGGGGCgGg -3'
miRNA:   3'- uGGCagGGCCUUUaaa---GGCCCUGgCg -5'
29646 3' -55.4 NC_006151.1 + 3718 0.66 0.94133
Target:  5'- cGCCG-CUCGGGcgcugggUCCGGGcCgGCg -3'
miRNA:   3'- -UGGCaGGGCCUuuaa---AGGCCCuGgCG- -5'
29646 3' -55.4 NC_006151.1 + 2874 0.66 0.939939
Target:  5'- gGCCGUCCgCGGGccaguccucgauGGUguccagcacgaugagCCGGcGCCGCg -3'
miRNA:   3'- -UGGCAGG-GCCU------------UUAaa-------------GGCCcUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 122431 0.66 0.936611
Target:  5'- cGCCGaggCCCGGGAGg---CGGaGGCgGCg -3'
miRNA:   3'- -UGGCa--GGGCCUUUaaagGCC-CUGgCG- -5'
29646 3' -55.4 NC_006151.1 + 45575 0.66 0.936611
Target:  5'- cAUCGUCCCGGGAcgg-CCcgagGGGGCgGg -3'
miRNA:   3'- -UGGCAGGGCCUUuaaaGG----CCCUGgCg -5'
29646 3' -55.4 NC_006151.1 + 126063 0.66 0.936611
Target:  5'- gUgGUCCUGGGugccaCgGGGGCCGUg -3'
miRNA:   3'- uGgCAGGGCCUuuaaaGgCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 49156 0.66 0.931657
Target:  5'- gGCUG-CCUGGAGGc--CUGGGcgcGCCGCg -3'
miRNA:   3'- -UGGCaGGGCCUUUaaaGGCCC---UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 75644 0.66 0.931657
Target:  5'- uGCCGUCgUCGGggG---CCGGcucGCCGCc -3'
miRNA:   3'- -UGGCAG-GGCCuuUaaaGGCCc--UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 100877 0.66 0.931657
Target:  5'- cGCCGUgaaCCUGGAGGUgcugcgCCGcGGCgCGCg -3'
miRNA:   3'- -UGGCA---GGGCCUUUAaa----GGCcCUG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 57965 0.66 0.931149
Target:  5'- cCCGUCCgugagccggugggCGGcGAgcgcgCCGcGGACCGCc -3'
miRNA:   3'- uGGCAGG-------------GCCuUUaaa--GGC-CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 122876 0.66 0.926467
Target:  5'- uGCUGgaCCCGGA-----CCGGGccaACCGCg -3'
miRNA:   3'- -UGGCa-GGGCCUuuaaaGGCCC---UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 117431 0.66 0.926467
Target:  5'- cACCGUgCCguugGGGAAg--CgCGGGuCCGCg -3'
miRNA:   3'- -UGGCAgGG----CCUUUaaaG-GCCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 98316 0.66 0.926467
Target:  5'- cGCa-UCCUGGAGuucuucAUggCCGcGGGCCGCg -3'
miRNA:   3'- -UGgcAGGGCCUU------UAaaGGC-CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 38279 0.66 0.926467
Target:  5'- gGCCGcggCCCGGcucg--CCGaGGCCGCc -3'
miRNA:   3'- -UGGCa--GGGCCuuuaaaGGCcCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 30571 0.66 0.92104
Target:  5'- cGCCGUCCCGcGGccccgUCgggcgcaGGGAUCGUa -3'
miRNA:   3'- -UGGCAGGGC-CUuuaa-AGg------CCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 77465 0.66 0.92104
Target:  5'- cGCUG-CgCGGGAAcgcgcCCGGGaACCGCg -3'
miRNA:   3'- -UGGCaGgGCCUUUaaa--GGCCC-UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 52368 0.66 0.92104
Target:  5'- cGCCGgcgcgccCCCGGGGcccgCgGGGGCgGCg -3'
miRNA:   3'- -UGGCa------GGGCCUUuaaaGgCCCUGgCG- -5'
29646 3' -55.4 NC_006151.1 + 32196 0.66 0.92104
Target:  5'- uCCuUCCCGGAc----UCGGGAgCCGCu -3'
miRNA:   3'- uGGcAGGGCCUuuaaaGGCCCU-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.