miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 5' -58.9 NC_006151.1 + 137758 0.66 0.833146
Target:  5'- ---cGGUcCGCGGccuGGCGCGCGUGcuCCa -3'
miRNA:   3'- cccuUCA-GCGCCc--UCGCGCGCACu-GG- -5'
29646 5' -58.9 NC_006151.1 + 42963 0.66 0.833146
Target:  5'- ------cCGCGGGucGUGUGCGUGugCg -3'
miRNA:   3'- cccuucaGCGCCCu-CGCGCGCACugG- -5'
29646 5' -58.9 NC_006151.1 + 102100 0.66 0.833146
Target:  5'- aGGAGcaCGUGGucGCGUGCGcgGGCCg -3'
miRNA:   3'- cCCUUcaGCGCCcuCGCGCGCa-CUGG- -5'
29646 5' -58.9 NC_006151.1 + 121264 0.66 0.825006
Target:  5'- uGGcGGcCGCGcuggcGGAGaucaacggGCGCGUGGCCg -3'
miRNA:   3'- cCCuUCaGCGC-----CCUCg-------CGCGCACUGG- -5'
29646 5' -58.9 NC_006151.1 + 14464 0.66 0.825006
Target:  5'- cGGGuuGGGUUggGCGGGuGgGCGgGUGGgCg -3'
miRNA:   3'- -CCC--UUCAG--CGCCCuCgCGCgCACUgG- -5'
29646 5' -58.9 NC_006151.1 + 142557 0.66 0.825006
Target:  5'- aGGggGUUGgGGGgaaGGCGCGCucu-CCu -3'
miRNA:   3'- cCCuuCAGCgCCC---UCGCGCGcacuGG- -5'
29646 5' -58.9 NC_006151.1 + 29286 0.66 0.825006
Target:  5'- cGGGAGGgugggGUGGGAGCGgagaaagugaGUGUGGgCg -3'
miRNA:   3'- -CCCUUCag---CGCCCUCGCg---------CGCACUgG- -5'
29646 5' -58.9 NC_006151.1 + 17253 0.66 0.824183
Target:  5'- aGGAccacuccguguccAGcCGCGGGGGCGgGC-UGAUa -3'
miRNA:   3'- cCCU-------------UCaGCGCCCUCGCgCGcACUGg -5'
29646 5' -58.9 NC_006151.1 + 8050 0.66 0.820043
Target:  5'- aGGGAGUUGgGGGgaggggagccaagauGGCGacgggGCGUGGCg -3'
miRNA:   3'- cCCUUCAGCgCCC---------------UCGCg----CGCACUGg -5'
29646 5' -58.9 NC_006151.1 + 127922 0.66 0.816702
Target:  5'- cGGGGA---GCGGGGGCG-GCGaGACg -3'
miRNA:   3'- -CCCUUcagCGCCCUCGCgCGCaCUGg -5'
29646 5' -58.9 NC_006151.1 + 22828 0.66 0.816702
Target:  5'- aGGggG-CGCgaGGcGAGCGCGC-UGcCCa -3'
miRNA:   3'- cCCuuCaGCG--CC-CUCGCGCGcACuGG- -5'
29646 5' -58.9 NC_006151.1 + 42657 0.66 0.816702
Target:  5'- cGGGcauccccGcCGCGGGGauGUGUGCGUGcgaGCCg -3'
miRNA:   3'- -CCCuu-----CaGCGCCCU--CGCGCGCAC---UGG- -5'
29646 5' -58.9 NC_006151.1 + 84426 0.66 0.816702
Target:  5'- aGGcGGcgCGCGGcGGCGCGCG-GcCCa -3'
miRNA:   3'- cCCuUCa-GCGCCcUCGCGCGCaCuGG- -5'
29646 5' -58.9 NC_006151.1 + 96729 0.66 0.816702
Target:  5'- -cGAGGagGCGGcGGGCGCGaCGacggaGGCCa -3'
miRNA:   3'- ccCUUCagCGCC-CUCGCGC-GCa----CUGG- -5'
29646 5' -58.9 NC_006151.1 + 131733 0.66 0.816702
Target:  5'- aGGcGggGUgGCGGGccCGgGCGaggcGACCg -3'
miRNA:   3'- -CC-CuuCAgCGCCCucGCgCGCa---CUGG- -5'
29646 5' -58.9 NC_006151.1 + 64418 0.66 0.811643
Target:  5'- --cAGGUCGCucucgcucugcGCGCGCGUGGCCg -3'
miRNA:   3'- cccUUCAGCGcccu-------CGCGCGCACUGG- -5'
29646 5' -58.9 NC_006151.1 + 134738 0.66 0.80824
Target:  5'- cGGGAcuuuGUCGCcccGaGcAGCGCGCGcggGGCCc -3'
miRNA:   3'- -CCCUu---CAGCGc--C-C-UCGCGCGCa--CUGG- -5'
29646 5' -58.9 NC_006151.1 + 93438 0.66 0.80824
Target:  5'- aGGGggGcgaGCGGGGGuCGCcgccGCGgGGCg -3'
miRNA:   3'- -CCCuuCag-CGCCCUC-GCG----CGCaCUGg -5'
29646 5' -58.9 NC_006151.1 + 127472 0.66 0.799629
Target:  5'- uGGGcGG-CGCGGaacGAGC-CGCG-GACCc -3'
miRNA:   3'- -CCCuUCaGCGCC---CUCGcGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 139080 0.66 0.799629
Target:  5'- cGGGcuc-CGCcuGGGGGCGCGCaUGGCg -3'
miRNA:   3'- -CCCuucaGCG--CCCUCGCGCGcACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.