miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29647 3' -68.8 NC_006151.1 + 82610 0.66 0.410508
Target:  5'- gUgGGCCCGCGCGcGGGcgccgcggugggcgcGGgacCCCCCUgCg -3'
miRNA:   3'- gGgCUGGGCGCGC-CCC---------------CC---GGGGGAgG- -5'
29647 3' -68.8 NC_006151.1 + 121447 0.66 0.407371
Target:  5'- cCUCGcugguGCCCGCGgagcUGGGGGGCaagcgCCCgCCc -3'
miRNA:   3'- -GGGC-----UGGGCGC----GCCCCCCGg----GGGaGG- -5'
29647 3' -68.8 NC_006151.1 + 36007 0.66 0.407371
Target:  5'- gUCCGGcCCCGacgGCGGcagccaGGGCUCCCggcgCCg -3'
miRNA:   3'- -GGGCU-GGGCg--CGCCc-----CCCGGGGGa---GG- -5'
29647 3' -68.8 NC_006151.1 + 66520 0.66 0.406589
Target:  5'- gCCgGGCUCGCGCGcgccgcgcucuucGGGGGCgCgCgcggCCg -3'
miRNA:   3'- -GGgCUGGGCGCGC-------------CCCCCGgGgGa---GG- -5'
29647 3' -68.8 NC_006151.1 + 83357 0.66 0.402694
Target:  5'- cCCCGGCgCGCGCGcGGGcgcgcaggcgccgcaGGUgCUCgUCCg -3'
miRNA:   3'- -GGGCUGgGCGCGC-CCC---------------CCGgGGG-AGG- -5'
29647 3' -68.8 NC_006151.1 + 125187 0.66 0.399595
Target:  5'- cCUCGGCCUcgccgGCGuCGuGGGccccgcGGCCCCCgcggCCg -3'
miRNA:   3'- -GGGCUGGG-----CGC-GC-CCC------CCGGGGGa---GG- -5'
29647 3' -68.8 NC_006151.1 + 84534 0.66 0.399595
Target:  5'- cCCCGuuCCC-CGUGGGcuucuGGGCCCgC-CCg -3'
miRNA:   3'- -GGGCu-GGGcGCGCCC-----CCCGGGgGaGG- -5'
29647 3' -68.8 NC_006151.1 + 11451 0.66 0.398823
Target:  5'- uCCCG-CCCGCGUGcccccGGGGCCaucggcuggaacaCCCUgagCCu -3'
miRNA:   3'- -GGGCuGGGCGCGCc----CCCCGG-------------GGGA---GG- -5'
29647 3' -68.8 NC_006151.1 + 58076 0.66 0.398823
Target:  5'- gUCCGcGCCCuCGCGGGcgagcucGGGCCCCa--- -3'
miRNA:   3'- -GGGC-UGGGcGCGCCC-------CCCGGGGgagg -5'
29647 3' -68.8 NC_006151.1 + 15884 0.66 0.391915
Target:  5'- gCCG-CCCGC-CGGGGGacgcGCgCCCCgacgcggCCc -3'
miRNA:   3'- gGGCuGGGCGcGCCCCC----CG-GGGGa------GG- -5'
29647 3' -68.8 NC_006151.1 + 17314 0.66 0.391915
Target:  5'- gCCG-UCCGC-CGGGGGGCgCCgCgUCa -3'
miRNA:   3'- gGGCuGGGCGcGCCCCCCG-GG-GgAGg -5'
29647 3' -68.8 NC_006151.1 + 18302 0.66 0.391915
Target:  5'- gUCGAagCCGgaGCGGGGcGCCUCCUCg -3'
miRNA:   3'- gGGCUg-GGCg-CGCCCCcCGGGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 3627 0.66 0.391915
Target:  5'- gCCGuCCC-CGCGGaGGGCcgcgccggagagCCCCUCg -3'
miRNA:   3'- gGGCuGGGcGCGCCcCCCG------------GGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 33969 0.66 0.391915
Target:  5'- aCgCGgcGCCCGCGCGGGGacaCUCUUUCCc -3'
miRNA:   3'- -GgGC--UGGGCGCGCCCCcc-GGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 5998 0.66 0.391915
Target:  5'- gCCCGAccgggggaCCCG-GCGGccGGGGacccgggcucguCCUCCUCCu -3'
miRNA:   3'- -GGGCU--------GGGCgCGCC--CCCC------------GGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 79083 0.66 0.391915
Target:  5'- aCCGccCCCGCGCGcGcGaGcGaGCgCCCCUCCg -3'
miRNA:   3'- gGGCu-GGGCGCGC-C-C-C-C-CG-GGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 135915 0.66 0.385085
Target:  5'- cCCCGGCggucgugcgcgcgcuCUGcCGCGGGGaGCCCCUcgcggcgcgggacgUCCu -3'
miRNA:   3'- -GGGCUG---------------GGC-GCGCCCCcCGGGGG--------------AGG- -5'
29647 3' -68.8 NC_006151.1 + 77529 0.66 0.384331
Target:  5'- cCUCGGCCgCGCGUGGGccGCCCCg--- -3'
miRNA:   3'- -GGGCUGG-GCGCGCCCccCGGGGgagg -5'
29647 3' -68.8 NC_006151.1 + 67951 0.66 0.384331
Target:  5'- gCCC-ACCaCGCGCcGGGGGCCaggaCCa-- -3'
miRNA:   3'- -GGGcUGG-GCGCGcCCCCCGGg---GGagg -5'
29647 3' -68.8 NC_006151.1 + 63745 0.66 0.384331
Target:  5'- cUCCGGCgCGU-CGGcGGGGCgUCCUCg -3'
miRNA:   3'- -GGGCUGgGCGcGCC-CCCCGgGGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.