miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 132305 0.66 0.569661
Target:  5'- gGuCCGcguGCAgGCGCCacgagagcUCGCGCgCCGUGg -3'
miRNA:   3'- aC-GGCu--CGUaCGCGG--------AGCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 129005 0.66 0.569661
Target:  5'- cGCCGugaugcccuucAGCGcgGCGUCggcCGCGCgCGCGu -3'
miRNA:   3'- aCGGC-----------UCGUa-CGCGGa--GCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 84655 0.66 0.569661
Target:  5'- gGCCGcgGGCGcGCGCCUCGagGCCgagGUGg -3'
miRNA:   3'- aCGGC--UCGUaCGCGGAGCg-CGGg--CGC- -5'
29649 5' -63.6 NC_006151.1 + 48966 0.66 0.569661
Target:  5'- cGCCuGGac-GCGCCUCacgGCGCCCGa- -3'
miRNA:   3'- aCGGcUCguaCGCGGAG---CGCGGGCgc -5'
29649 5' -63.6 NC_006151.1 + 95783 0.66 0.569661
Target:  5'- aUGCCGcGCAUGUucaGCaCggcgCGaCGUCCGCGu -3'
miRNA:   3'- -ACGGCuCGUACG---CG-Ga---GC-GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 93676 0.66 0.569661
Target:  5'- cUGUCGcGCG-GgGCg-CGCGCCCGCa -3'
miRNA:   3'- -ACGGCuCGUaCgCGgaGCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 73171 0.66 0.569661
Target:  5'- aGaCGGGCGUgGCGaugaaCUCGCacaccgacugcuGCCCGCGg -3'
miRNA:   3'- aCgGCUCGUA-CGCg----GAGCG------------CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 139444 0.66 0.569661
Target:  5'- cGaCGGGUuaaagGCGCCcCGcCGCCCGCc -3'
miRNA:   3'- aCgGCUCGua---CGCGGaGC-GCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 28309 0.66 0.568694
Target:  5'- gGCCGGcGCGUccccgggGCGCC-CGCcCCCGgGg -3'
miRNA:   3'- aCGGCU-CGUA-------CGCGGaGCGcGGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 82377 0.66 0.560006
Target:  5'- cGCCGGGCGcGUcgaaggccacgaGCUcCGCGCCCGa- -3'
miRNA:   3'- aCGGCUCGUaCG------------CGGaGCGCGGGCgc -5'
29649 5' -63.6 NC_006151.1 + 58127 0.66 0.560006
Target:  5'- gGUCGcgucGCccGCGCCguaCGCGgCCGCGu -3'
miRNA:   3'- aCGGCu---CGuaCGCGGa--GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 64914 0.66 0.560006
Target:  5'- cGCgCGAGCAccuccacgGCGUaCUCGCGCgucagcgccuggCCGCGc -3'
miRNA:   3'- aCG-GCUCGUa-------CGCG-GAGCGCG------------GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 65367 0.66 0.560006
Target:  5'- cGCCccaGGGCGUGCaCCaCGUGCCC-CGg -3'
miRNA:   3'- aCGG---CUCGUACGcGGaGCGCGGGcGC- -5'
29649 5' -63.6 NC_006151.1 + 111046 0.66 0.560006
Target:  5'- --aCGGGCAggGCGCCcucgaGCGUCUGCGc -3'
miRNA:   3'- acgGCUCGUa-CGCGGag---CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 60896 0.66 0.560006
Target:  5'- cGCgCGAGCAggGCGUCcacgcgggccagUCGCGCCaugGUGg -3'
miRNA:   3'- aCG-GCUCGUa-CGCGG------------AGCGCGGg--CGC- -5'
29649 5' -63.6 NC_006151.1 + 105179 0.66 0.560006
Target:  5'- cGCCGAGCGcaucgagGCGCUgcagacgcUGCGCCaggagGCGg -3'
miRNA:   3'- aCGGCUCGUa------CGCGGa-------GCGCGGg----CGC- -5'
29649 5' -63.6 NC_006151.1 + 110181 0.66 0.559043
Target:  5'- cGCC--GCGUGcCGCCUgauagcgCGcCGCCUGCGg -3'
miRNA:   3'- aCGGcuCGUAC-GCGGA-------GC-GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 82170 0.66 0.554235
Target:  5'- aGCCGAGCGccgggggcgcgaucaUGCGCaUC-CGCUCgGCGg -3'
miRNA:   3'- aCGGCUCGU---------------ACGCGgAGcGCGGG-CGC- -5'
29649 5' -63.6 NC_006151.1 + 118942 0.66 0.551356
Target:  5'- cGCCGAcGCGgcgcugucgcuggagGCGCUcgUCGcCGCCgGCGu -3'
miRNA:   3'- aCGGCU-CGUa--------------CGCGG--AGC-GCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 135863 0.66 0.550397
Target:  5'- -aCCGGGCAcGUgGCCa-GCGUCCGCGu -3'
miRNA:   3'- acGGCUCGUaCG-CGGagCGCGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.