miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29650 5' -58.6 NC_006151.1 + 124148 0.66 0.838142
Target:  5'- cGGCUggaGC-CCGAgCA-GGCCUGCCCc- -3'
miRNA:   3'- -CCGGa--UGcGGCU-GUaCCGGAUGGGcc -5'
29650 5' -58.6 NC_006151.1 + 98384 0.66 0.838142
Target:  5'- cGCgCUGCGCC----UGGCCUGCCgCGc -3'
miRNA:   3'- cCG-GAUGCGGcuguACCGGAUGG-GCc -5'
29650 5' -58.6 NC_006151.1 + 57302 0.66 0.838142
Target:  5'- cGGCCUugG-CGGCGcGGCCgaaGCCgcugcgcgaCGGg -3'
miRNA:   3'- -CCGGAugCgGCUGUaCCGGa--UGG---------GCC- -5'
29650 5' -58.6 NC_006151.1 + 45161 0.66 0.838142
Target:  5'- cGGCUggauggACGgaCGGgGUGGCgUGCCCGc -3'
miRNA:   3'- -CCGGa-----UGCg-GCUgUACCGgAUGGGCc -5'
29650 5' -58.6 NC_006151.1 + 137031 0.66 0.838142
Target:  5'- cGGCCUGC-CgGACGcGuGCCc-CCCGGc -3'
miRNA:   3'- -CCGGAUGcGgCUGUaC-CGGauGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 54732 0.66 0.838142
Target:  5'- uGGCCgagcuCGCCGA---GGCCaUGCgCGGc -3'
miRNA:   3'- -CCGGau---GCGGCUguaCCGG-AUGgGCC- -5'
29650 5' -58.6 NC_006151.1 + 2800 0.66 0.838142
Target:  5'- gGGCCaGCGCaCGGCGcacUGGgCgGCCgGGu -3'
miRNA:   3'- -CCGGaUGCG-GCUGU---ACCgGaUGGgCC- -5'
29650 5' -58.6 NC_006151.1 + 51434 0.66 0.837342
Target:  5'- uGGCCaugacgcggACGCCGcgcucguacucgcACAcGGUCUGCCCa- -3'
miRNA:   3'- -CCGGa--------UGCGGC-------------UGUaCCGGAUGGGcc -5'
29650 5' -58.6 NC_006151.1 + 117796 0.66 0.83654
Target:  5'- cGCC-ACGcCCGGCGgggcggGGCCccacgcuuuaagACCCGGc -3'
miRNA:   3'- cCGGaUGC-GGCUGUa-----CCGGa-----------UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 130954 0.66 0.83654
Target:  5'- gGGUC-GCGCgGGCGcgggGGCCgguaccccggccGCCCGGg -3'
miRNA:   3'- -CCGGaUGCGgCUGUa---CCGGa-----------UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 37568 0.66 0.830064
Target:  5'- gGGCC---GCCGGCGaGGCCauguCCUGGc -3'
miRNA:   3'- -CCGGaugCGGCUGUaCCGGau--GGGCC- -5'
29650 5' -58.6 NC_006151.1 + 49400 0.66 0.830064
Target:  5'- uGGCCcgcACGCCcuuCA-GGaCCUGCCCGc -3'
miRNA:   3'- -CCGGa--UGCGGcu-GUaCC-GGAUGGGCc -5'
29650 5' -58.6 NC_006151.1 + 55461 0.66 0.830064
Target:  5'- cGGCCc-CGCCGGgG-GGCgCgcGCCCGGc -3'
miRNA:   3'- -CCGGauGCGGCUgUaCCG-Ga-UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 79301 0.66 0.830064
Target:  5'- aGuCCcGCGCCccggGACG-GGCCUcCCCGGc -3'
miRNA:   3'- cC-GGaUGCGG----CUGUaCCGGAuGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 91488 0.66 0.830064
Target:  5'- cGCCgcgcACGCUGGCGUGcaCCagcaGCCCGGc -3'
miRNA:   3'- cCGGa---UGCGGCUGUACc-GGa---UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 126167 0.66 0.830064
Target:  5'- cGGCCUGguCGCgGcCuuccUGGCCUACCgGc -3'
miRNA:   3'- -CCGGAU--GCGgCuGu---ACCGGAUGGgCc -5'
29650 5' -58.6 NC_006151.1 + 126390 0.66 0.830064
Target:  5'- gGGCCcGCGCUG-C-UGGCCaGCCgcguCGGg -3'
miRNA:   3'- -CCGGaUGCGGCuGuACCGGaUGG----GCC- -5'
29650 5' -58.6 NC_006151.1 + 62490 0.66 0.830064
Target:  5'- cGCCaACGUgGACAaGGCgCggacgacgGCCCGGc -3'
miRNA:   3'- cCGGaUGCGgCUGUaCCG-Ga-------UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 68782 0.66 0.830064
Target:  5'- cGGCgaggUGCGCCGcCGcGGCCgucaucagGCCCGa -3'
miRNA:   3'- -CCGg---AUGCGGCuGUaCCGGa-------UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 13999 0.66 0.830064
Target:  5'- gGGCCcACGugugaggccCCGGCcaaugGGCCcgucgGCCCGGc -3'
miRNA:   3'- -CCGGaUGC---------GGCUGua---CCGGa----UGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.