miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2973 3' -58.8 NC_001493.1 + 114503 0.66 0.792592
Target:  5'- -aGACgGUGAGCGGgucagcaACCCcacggacaGGGGGUu- -3'
miRNA:   3'- agCUGgCACUUGCC-------UGGG--------CCCCCAuu -5'
2973 3' -58.8 NC_001493.1 + 91211 0.66 0.784492
Target:  5'- cUGACCGaaucccaGAagcaACGGucCCUGGGGGUGAc -3'
miRNA:   3'- aGCUGGCa------CU----UGCCu-GGGCCCCCAUU- -5'
2973 3' -58.8 NC_001493.1 + 43474 0.66 0.756748
Target:  5'- gCGGCCGaucucguaGACGGACCCaGGGcGUGu -3'
miRNA:   3'- aGCUGGCac------UUGCCUGGGcCCC-CAUu -5'
2973 3' -58.8 NC_001493.1 + 36212 0.66 0.756748
Target:  5'- gUUGuACCG-GGGCGGccuGCgCGGGGGUGc -3'
miRNA:   3'- -AGC-UGGCaCUUGCC---UGgGCCCCCAUu -5'
2973 3' -58.8 NC_001493.1 + 112991 0.66 0.756748
Target:  5'- uUCG-CCGggaGGAUGGGCUCGGGGa--- -3'
miRNA:   3'- -AGCuGGCa--CUUGCCUGGGCCCCcauu -5'
2973 3' -58.8 NC_001493.1 + 42910 0.66 0.755805
Target:  5'- aUCGGuuGUGGcuucacgGCGGGCUCGGGuguuGGUGc -3'
miRNA:   3'- -AGCUggCACU-------UGCCUGGGCCC----CCAUu -5'
2973 3' -58.8 NC_001493.1 + 107753 0.66 0.755805
Target:  5'- cCGACCGauccguaUGuuACGGGUgCGGGGGUGAc -3'
miRNA:   3'- aGCUGGC-------ACu-UGCCUGgGCCCCCAUU- -5'
2973 3' -58.8 NC_001493.1 + 58364 0.67 0.747275
Target:  5'- cCGACCGUGA---GACUCGGGGuGg-- -3'
miRNA:   3'- aGCUGGCACUugcCUGGGCCCC-Cauu -5'
2973 3' -58.8 NC_001493.1 + 49767 0.67 0.737704
Target:  5'- cUCGGCCGUGcuGACGGugguguacaACCCcccugugcuGGGGGg-- -3'
miRNA:   3'- -AGCUGGCAC--UUGCC---------UGGG---------CCCCCauu -5'
2973 3' -58.8 NC_001493.1 + 44194 0.67 0.728043
Target:  5'- -gGGCCG-GGuauuuCGGGCCCuGGGGGa-- -3'
miRNA:   3'- agCUGGCaCUu----GCCUGGG-CCCCCauu -5'
2973 3' -58.8 NC_001493.1 + 64248 0.67 0.718302
Target:  5'- gUUG-UCGUGAugagcuCGGucuccgGCCCGGGGGUGGg -3'
miRNA:   3'- -AGCuGGCACUu-----GCC------UGGGCCCCCAUU- -5'
2973 3' -58.8 NC_001493.1 + 83535 0.67 0.718302
Target:  5'- aUCGcACCG-GuAGCGGGCUCGGcGGGg-- -3'
miRNA:   3'- -AGC-UGGCaC-UUGCCUGGGCC-CCCauu -5'
2973 3' -58.8 NC_001493.1 + 32597 0.67 0.718302
Target:  5'- gCGACCG-GGACGGGCguuuacgguCCGGGGc--- -3'
miRNA:   3'- aGCUGGCaCUUGCCUG---------GGCCCCcauu -5'
2973 3' -58.8 NC_001493.1 + 26391 0.67 0.70849
Target:  5'- gUCGACCca-GACGGGCCCGGGu---- -3'
miRNA:   3'- -AGCUGGcacUUGCCUGGGCCCccauu -5'
2973 3' -58.8 NC_001493.1 + 109852 0.67 0.698615
Target:  5'- uUCGGCCucGAGCGcGCCCGGGGcgauGUGAc -3'
miRNA:   3'- -AGCUGGcaCUUGCcUGGGCCCC----CAUU- -5'
2973 3' -58.8 NC_001493.1 + 128244 0.67 0.698615
Target:  5'- cCGACCccGGACGcGACCCGGGaGUc- -3'
miRNA:   3'- aGCUGGcaCUUGC-CUGGGCCCcCAuu -5'
2973 3' -58.8 NC_001493.1 + 12690 0.67 0.698615
Target:  5'- cCGACCccGGACGcGACCCGGGaGUc- -3'
miRNA:   3'- aGCUGGcaCUUGC-CUGGGCCCcCAuu -5'
2973 3' -58.8 NC_001493.1 + 81304 0.68 0.688686
Target:  5'- aUCGACUGgguaagcuACGGGCCaGGGGGg-- -3'
miRNA:   3'- -AGCUGGCacu-----UGCCUGGgCCCCCauu -5'
2973 3' -58.8 NC_001493.1 + 36384 0.68 0.662679
Target:  5'- cUCGACCGcggucuuaggcucgGGGCGGGCCCucuugguucgaGGGGGc-- -3'
miRNA:   3'- -AGCUGGCa-------------CUUGCCUGGG-----------CCCCCauu -5'
2973 3' -58.8 NC_001493.1 + 20680 0.68 0.648599
Target:  5'- gCGGCCcaUGAuCGaGGCCCGGGGGc-- -3'
miRNA:   3'- aGCUGGc-ACUuGC-CUGGGCCCCCauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.