miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 20897 0.68 0.631068
Target:  5'- gGGUGUCGACGGgcagacucacCAGCAgcUCGaucaccggagccuuCUGGCGCg -3'
miRNA:   3'- -CCGCAGCUGCU----------GUUGU--AGC--------------GGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 2098 0.68 0.645575
Target:  5'- aGGCGUacaUGGCGA-AGCAccaCGCUGACGUc -3'
miRNA:   3'- -CCGCA---GCUGCUgUUGUa--GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 36828 0.68 0.650035
Target:  5'- --aGUCGAcCGGCGcgaggcucucugcgaGCGUCGCCGA-GCu -3'
miRNA:   3'- ccgCAGCU-GCUGU---------------UGUAGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 9625 0.68 0.62214
Target:  5'- cGCGUgcgccccUGGCGAUaccucgGACAUCuccuggcaccugGCCGACGCg -3'
miRNA:   3'- cCGCA-------GCUGCUG------UUGUAG------------CGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 21434 0.68 0.623256
Target:  5'- uGGCGgcCGGCGGCAGaGUCGCgGcaacCGCu -3'
miRNA:   3'- -CCGCa-GCUGCUGUUgUAGCGgCu---GCG- -5'
30406 3' -53.9 NC_006548.1 + 17552 0.68 0.600969
Target:  5'- gGGuCGUccaguugcCGACGACAggcuGCAUCGCuucggccagcugCGGCGCc -3'
miRNA:   3'- -CC-GCA--------GCUGCUGU----UGUAGCG------------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 20063 0.68 0.634417
Target:  5'- aGGUG-CG-CGACGGCAUgcucuaUGCCGAgcCGCa -3'
miRNA:   3'- -CCGCaGCuGCUGUUGUA------GCGGCU--GCG- -5'
30406 3' -53.9 NC_006548.1 + 30974 0.68 0.634417
Target:  5'- gGGCGacuUCGACGGCGcuuucuACGU-GCCaACGCu -3'
miRNA:   3'- -CCGC---AGCUGCUGU------UGUAgCGGcUGCG- -5'
30406 3' -53.9 NC_006548.1 + 31016 0.68 0.612104
Target:  5'- gGGCGcCGAgGACGugAUUGUCGAa-- -3'
miRNA:   3'- -CCGCaGCUgCUGUugUAGCGGCUgcg -5'
30406 3' -53.9 NC_006548.1 + 21304 0.68 0.608761
Target:  5'- cGGUcgaGUaCGGCGGCAACGUcacucgcggugaugCGCUGACGg -3'
miRNA:   3'- -CCG---CA-GCUGCUGUUGUA--------------GCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 15115 0.68 0.600969
Target:  5'- -aCGUCGAUGACGAUcUCGCCcagauccuuGGCGg -3'
miRNA:   3'- ccGCAGCUGCUGUUGuAGCGG---------CUGCg -5'
30406 3' -53.9 NC_006548.1 + 31504 0.68 0.612104
Target:  5'- cGCGaucUCGACGuGCAgguGCAgauaggcCGCCGugGCa -3'
miRNA:   3'- cCGC---AGCUGC-UGU---UGUa------GCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 18568 0.69 0.535045
Target:  5'- cGGCGgccaCGACGGaccggguCAUUGgCGACGCu -3'
miRNA:   3'- -CCGCa---GCUGCUguu----GUAGCgGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 23367 0.69 0.545885
Target:  5'- -cCGUCGAUGuaGCcuugGGCAUCGCUGACcGCg -3'
miRNA:   3'- ccGCAGCUGC--UG----UUGUAGCGGCUG-CG- -5'
30406 3' -53.9 NC_006548.1 + 7845 0.69 0.545885
Target:  5'- aGGCcUCGACcuaGACGACAUCGa--GCGCa -3'
miRNA:   3'- -CCGcAGCUG---CUGUUGUAGCggcUGCG- -5'
30406 3' -53.9 NC_006548.1 + 32471 0.69 0.535045
Target:  5'- cGGCaaCGGCGGCGACGgcUGCCGGCcagGCu -3'
miRNA:   3'- -CCGcaGCUGCUGUUGUa-GCGGCUG---CG- -5'
30406 3' -53.9 NC_006548.1 + 25041 0.69 0.535045
Target:  5'- uGGCGUCGGCGGCGuuCAaggUGUCGuACaGCa -3'
miRNA:   3'- -CCGCAGCUGCUGUu-GUa--GCGGC-UG-CG- -5'
30406 3' -53.9 NC_006548.1 + 21395 0.69 0.586537
Target:  5'- gGGCGUCGGCcgucaGCGcaucaccgcgagugACGUUGCCGcCGUa -3'
miRNA:   3'- -CCGCAGCUGc----UGU--------------UGUAGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 2659 0.69 0.545885
Target:  5'- uGGUGcucaCGACcugGACAGCcUCGCCGAUGg -3'
miRNA:   3'- -CCGCa---GCUG---CUGUUGuAGCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 18611 0.69 0.566666
Target:  5'- aGCGUgGGCGACAGCgAUauccugcaugugcUGCgCGAUGCg -3'
miRNA:   3'- cCGCAgCUGCUGUUG-UA-------------GCG-GCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.