Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 31016 | 0.68 | 0.612104 |
Target: 5'- gGGCGcCGAgGACGugAUUGUCGAa-- -3' miRNA: 3'- -CCGCaGCUgCUGUugUAGCGGCUgcg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21304 | 0.68 | 0.608761 |
Target: 5'- cGGUcgaGUaCGGCGGCAACGUcacucgcggugaugCGCUGACGg -3' miRNA: 3'- -CCG---CA-GCUGCUGUUGUA--------------GCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 11747 | 0.68 | 0.634417 |
Target: 5'- uGCG-CGGCGcGCGGCggCGCCGGgGUu -3' miRNA: 3'- cCGCaGCUGC-UGUUGuaGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21434 | 0.68 | 0.623256 |
Target: 5'- uGGCGgcCGGCGGCAGaGUCGCgGcaacCGCu -3' miRNA: 3'- -CCGCa-GCUGCUGUUgUAGCGgCu---GCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36828 | 0.68 | 0.650035 |
Target: 5'- --aGUCGAcCGGCGcgaggcucucugcgaGCGUCGCCGA-GCu -3' miRNA: 3'- ccgCAGCU-GCUGU---------------UGUAGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17552 | 0.68 | 0.600969 |
Target: 5'- gGGuCGUccaguugcCGACGACAggcuGCAUCGCuucggccagcugCGGCGCc -3' miRNA: 3'- -CC-GCA--------GCUGCUGU----UGUAGCG------------GCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 9625 | 0.68 | 0.62214 |
Target: 5'- cGCGUgcgccccUGGCGAUaccucgGACAUCuccuggcaccugGCCGACGCg -3' miRNA: 3'- cCGCA-------GCUGCUG------UUGUAG------------CGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 20897 | 0.68 | 0.631068 |
Target: 5'- gGGUGUCGACGGgcagacucacCAGCAgcUCGaucaccggagccuuCUGGCGCg -3' miRNA: 3'- -CCGCAGCUGCU----------GUUGU--AGC--------------GGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 15115 | 0.68 | 0.600969 |
Target: 5'- -aCGUCGAUGACGAUcUCGCCcagauccuuGGCGg -3' miRNA: 3'- ccGCAGCUGCUGUUGuAGCGG---------CUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 2098 | 0.68 | 0.645575 |
Target: 5'- aGGCGUacaUGGCGA-AGCAccaCGCUGACGUc -3' miRNA: 3'- -CCGCA---GCUGCUgUUGUa--GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 31504 | 0.68 | 0.612104 |
Target: 5'- cGCGaucUCGACGuGCAgguGCAgauaggcCGCCGugGCa -3' miRNA: 3'- cCGC---AGCUGC-UGU---UGUa------GCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27002 | 0.67 | 0.656721 |
Target: 5'- aGCGUCGGCGA----GUcCGCCGAUcaGCa -3' miRNA: 3'- cCGCAGCUGCUguugUA-GCGGCUG--CG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 13428 | 0.67 | 0.655607 |
Target: 5'- cGGCGUCaGAacCGGCGGCGggccaggUCGCUGuuugaGCGCc -3' miRNA: 3'- -CCGCAG-CU--GCUGUUGU-------AGCGGC-----UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27996 | 0.67 | 0.666732 |
Target: 5'- gGGCcUUGGCGGCAagcgagaACG-CGCCGggaACGCg -3' miRNA: 3'- -CCGcAGCUGCUGU-------UGUaGCGGC---UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17399 | 0.67 | 0.678931 |
Target: 5'- cGGCGcCGACGccuuccacCGAguUCGCCGAgGg -3' miRNA: 3'- -CCGCaGCUGCu-------GUUguAGCGGCUgCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35194 | 0.67 | 0.667843 |
Target: 5'- aGGC--CGAgGGCGGCAUCGuuGGgcCGCu -3' miRNA: 3'- -CCGcaGCUgCUGUUGUAGCggCU--GCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 5310 | 0.67 | 0.667843 |
Target: 5'- aGCcUCGGCGuuGGCG-CGCCGGgGCu -3' miRNA: 3'- cCGcAGCUGCugUUGUaGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36623 | 0.67 | 0.667843 |
Target: 5'- uGCGUCGAU-ACGgugccagcgccGCAUgagGCCGGCGCg -3' miRNA: 3'- cCGCAGCUGcUGU-----------UGUAg--CGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 24967 | 0.67 | 0.678931 |
Target: 5'- aGUGUgcUGuACGACAccuugaACGcCGCCGACGCc -3' miRNA: 3'- cCGCA--GC-UGCUGU------UGUaGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 29410 | 0.67 | 0.678931 |
Target: 5'- aGGCGgucagccgaUCGcUGGcCGACGUUGCCG-CGCa -3' miRNA: 3'- -CCGC---------AGCuGCU-GUUGUAGCGGCuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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