miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 21502 0.66 0.765006
Target:  5'- gGGCGauguaGACGGaccCGAUAUCaccCCGACGCc -3'
miRNA:   3'- -CCGCag---CUGCU---GUUGUAGc--GGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 21434 0.68 0.623256
Target:  5'- uGGCGgcCGGCGGCAGaGUCGCgGcaacCGCu -3'
miRNA:   3'- -CCGCa-GCUGCUGUUgUAGCGgCu---GCG- -5'
30406 3' -53.9 NC_006548.1 + 21395 0.69 0.586537
Target:  5'- gGGCGUCGGCcgucaGCGcaucaccgcgagugACGUUGCCGcCGUa -3'
miRNA:   3'- -CCGCAGCUGc----UGU--------------UGUAGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 21306 0.66 0.711874
Target:  5'- -cCGUCGGCGGCGGgAauuucggUGCUGAUGCc -3'
miRNA:   3'- ccGCAGCUGCUGUUgUa------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 21304 0.68 0.608761
Target:  5'- cGGUcgaGUaCGGCGGCAACGUcacucgcggugaugCGCUGACGg -3'
miRNA:   3'- -CCG---CA-GCUGCUGUUGUA--------------GCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 21207 0.74 0.32488
Target:  5'- cGGCGggCGGCGAUGGCGcCGCUGGCa- -3'
miRNA:   3'- -CCGCa-GCUGCUGUUGUaGCGGCUGcg -5'
30406 3' -53.9 NC_006548.1 + 20897 0.68 0.631068
Target:  5'- gGGUGUCGACGGgcagacucacCAGCAgcUCGaucaccggagccuuCUGGCGCg -3'
miRNA:   3'- -CCGCAGCUGCU----------GUUGU--AGC--------------GGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 20561 0.73 0.35825
Target:  5'- cGGCGUCGACGccuucuauuGCGGguUCGgagaaCGACGCc -3'
miRNA:   3'- -CCGCAGCUGC---------UGUUguAGCg----GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 20511 0.82 0.098226
Target:  5'- aGGCGUCGACGccGCAGCAgccucUGCCGcCGCu -3'
miRNA:   3'- -CCGCAGCUGC--UGUUGUa----GCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 20063 0.68 0.634417
Target:  5'- aGGUG-CG-CGACGGCAUgcucuaUGCCGAgcCGCa -3'
miRNA:   3'- -CCGCaGCuGCUGUUGUA------GCGGCU--GCG- -5'
30406 3' -53.9 NC_006548.1 + 20059 0.66 0.754613
Target:  5'- gGGUGgcCGAUGACgAGCGgggccUCGCUGAgCGCc -3'
miRNA:   3'- -CCGCa-GCUGCUG-UUGU-----AGCGGCU-GCG- -5'
30406 3' -53.9 NC_006548.1 + 19751 0.74 0.309082
Target:  5'- aGGCGUCGAU-ACGG-GUUGUCGGCGCg -3'
miRNA:   3'- -CCGCAGCUGcUGUUgUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 18611 0.69 0.566666
Target:  5'- aGCGUgGGCGACAGCgAUauccugcaugugcUGCgCGAUGCg -3'
miRNA:   3'- cCGCAgCUGCUGUUG-UA-------------GCG-GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 18568 0.69 0.535045
Target:  5'- cGGCGgccaCGACGGaccggguCAUUGgCGACGCu -3'
miRNA:   3'- -CCGCa---GCUGCUguu----GUAGCgGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 18142 0.73 0.34127
Target:  5'- cGCGggGAuguuCGACGGCAUCGCUGugGUu -3'
miRNA:   3'- cCGCagCU----GCUGUUGUAGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 17552 0.68 0.600969
Target:  5'- gGGuCGUccaguugcCGACGACAggcuGCAUCGCuucggccagcugCGGCGCc -3'
miRNA:   3'- -CC-GCA--------GCUGCUGU----UGUAGCG------------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 17466 0.66 0.72271
Target:  5'- cGGCGaacUCgGugGAaGGCGUcggCGCCGugGCc -3'
miRNA:   3'- -CCGC---AG-CugCUgUUGUA---GCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 17456 0.66 0.744091
Target:  5'- cGGCGaUGGCGccGCAGC-UgGCCGAaGCg -3'
miRNA:   3'- -CCGCaGCUGC--UGUUGuAgCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 17399 0.67 0.678931
Target:  5'- cGGCGcCGACGccuuccacCGAguUCGCCGAgGg -3'
miRNA:   3'- -CCGCaGCUGCu-------GUUguAGCGGCUgCg -5'
30406 3' -53.9 NC_006548.1 + 15839 0.67 0.678931
Target:  5'- uGGCGUCGAUG-CAGaugCGCUcacaGCGCu -3'
miRNA:   3'- -CCGCAGCUGCuGUUguaGCGGc---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.