miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 26407 0.66 0.710166
Target:  5'- gCCUGGAagaaacaCUGUCGGCGGC-UCACCUg -3'
miRNA:   3'- -GGACCUac-----GGCAGUUGUUGcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 4477 0.66 0.710166
Target:  5'- aUCUGGcgGUGCaUGUCGGCGAa-CCGCUCg -3'
miRNA:   3'- -GGACC--UACG-GCAGUUGUUgcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 21666 0.66 0.710166
Target:  5'- cCCUGGucgGCCG-CAaguccaagccgaACGaaguagaguucaGCGCCACCg -3'
miRNA:   3'- -GGACCua-CGGCaGU------------UGU------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 8861 0.66 0.703557
Target:  5'- aCCUGGcgGCCGcccacggaaagcuccUCAucgacaucccgACuggucgcacGACGUCGCCCa -3'
miRNA:   3'- -GGACCuaCGGC---------------AGU-----------UG---------UUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 10356 0.66 0.695814
Target:  5'- aCUGGAUcuucuccuacuuccGCCaGUUAACAGCGaaGCCa -3'
miRNA:   3'- gGACCUA--------------CGG-CAGUUGUUGCggUGGg -5'
30412 3' -54.2 NC_006548.1 + 35506 0.66 0.68804
Target:  5'- aCUGGG-GCCGUggCAAgGAuCGCgGCCUg -3'
miRNA:   3'- gGACCUaCGGCA--GUUgUU-GCGgUGGG- -5'
30412 3' -54.2 NC_006548.1 + 31649 0.66 0.68804
Target:  5'- gCCUGGAUgGCC-UgGAUGGCGgCCccucGCCCg -3'
miRNA:   3'- -GGACCUA-CGGcAgUUGUUGC-GG----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 1047 0.66 0.68804
Target:  5'- gCCaUGGAacaccuccaUGCCauGUCGACGAC-CCAgCCg -3'
miRNA:   3'- -GG-ACCU---------ACGG--CAGUUGUUGcGGUgGG- -5'
30412 3' -54.2 NC_006548.1 + 32236 0.66 0.68804
Target:  5'- gCUGGuGUGCCG-C-AUAGCuGCCAgCCa -3'
miRNA:   3'- gGACC-UACGGCaGuUGUUG-CGGUgGG- -5'
30412 3' -54.2 NC_006548.1 + 544 0.66 0.68804
Target:  5'- aUUGGAcgcUGCCGccgccauccuuUCGGCAGCuguuccaggccgGCCGCCUg -3'
miRNA:   3'- gGACCU---ACGGC-----------AGUUGUUG------------CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 1432 0.66 0.686927
Target:  5'- uCCUGGGccuccUGCCGcuuuacgUCAGCAucGCGCCgaggcggaucGCCg -3'
miRNA:   3'- -GGACCU-----ACGGC-------AGUUGU--UGCGG----------UGGg -5'
30412 3' -54.2 NC_006548.1 + 17851 0.66 0.676887
Target:  5'- --aGGAccgGUCGUUAGCcGCGCCACg- -3'
miRNA:   3'- ggaCCUa--CGGCAGUUGuUGCGGUGgg -5'
30412 3' -54.2 NC_006548.1 + 13468 0.66 0.676887
Target:  5'- gCCaGGAUGuCCGcCGGaguGACGCCGCUUu -3'
miRNA:   3'- -GGaCCUAC-GGCaGUUg--UUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 15545 0.66 0.676887
Target:  5'- gCUGGAaagacuccUCGUCAGCAcaGC-CCGCCCg -3'
miRNA:   3'- gGACCUac------GGCAGUUGU--UGcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 5350 0.66 0.665689
Target:  5'- gCCUGGc-GCaCGUCAuCAaacugcGCGCCaugGCCCa -3'
miRNA:   3'- -GGACCuaCG-GCAGUuGU------UGCGG---UGGG- -5'
30412 3' -54.2 NC_006548.1 + 18062 0.66 0.665689
Target:  5'- uUCUGGAUGUacaaccaCAGCGAUGCCGucgaacaucCCCg -3'
miRNA:   3'- -GGACCUACGgca----GUUGUUGCGGU---------GGG- -5'
30412 3' -54.2 NC_006548.1 + 14455 0.67 0.654459
Target:  5'- gCUGGcacgaauUGCCGcCAGC--CGCCGCuCCa -3'
miRNA:   3'- gGACCu------ACGGCaGUUGuuGCGGUG-GG- -5'
30412 3' -54.2 NC_006548.1 + 19072 0.67 0.654459
Target:  5'- cCCUGGcgGCCGggAAau-CGCCAguUCCg -3'
miRNA:   3'- -GGACCuaCGGCagUUguuGCGGU--GGG- -5'
30412 3' -54.2 NC_006548.1 + 16494 0.67 0.651085
Target:  5'- aCCUGGAgcagcaGCUG-CAGCGcgugggcugggaccGCGUCACCa -3'
miRNA:   3'- -GGACCUa-----CGGCaGUUGU--------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 37957 0.67 0.643207
Target:  5'- gCUGGGUGCCGgCggUgagguAgGCCguGCCCg -3'
miRNA:   3'- gGACCUACGGCaGuuGu----UgCGG--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.