miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 8690 0.69 0.542676
Target:  5'- gCCUGGAgucccugGCCuggCAccACGgaaACGUCACCCa -3'
miRNA:   3'- -GGACCUa------CGGca-GU--UGU---UGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 623 0.68 0.562506
Target:  5'- gCCUGGAacagcUGCCGaaaggauggcggCGGCAGCGUCcaauccucaagGCCCu -3'
miRNA:   3'- -GGACCU-----ACGGCa-----------GUUGUUGCGG-----------UGGG- -5'
30412 3' -54.2 NC_006548.1 + 20861 0.68 0.575835
Target:  5'- cCCUGGAguucGCCGagGGCGACgGCCAg-- -3'
miRNA:   3'- -GGACCUa---CGGCagUUGUUG-CGGUggg -5'
30412 3' -54.2 NC_006548.1 + 26339 0.68 0.575835
Target:  5'- gCUGGAUGUCgGUCAGCGuuuCCGgCCg -3'
miRNA:   3'- gGACCUACGG-CAGUUGUugcGGUgGG- -5'
30412 3' -54.2 NC_006548.1 + 27301 0.68 0.585879
Target:  5'- gCUGGGUGCCaUCGAuccgacuCAGCGCUcucucGCUCg -3'
miRNA:   3'- gGACCUACGGcAGUU-------GUUGCGG-----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 1124 0.68 0.586997
Target:  5'- gCCUGGccgucUGCgCGgcCAGCAACGCCugUg -3'
miRNA:   3'- -GGACCu----ACG-GCa-GUUGUUGCGGugGg -5'
30412 3' -54.2 NC_006548.1 + 13117 0.68 0.594834
Target:  5'- gCCUGGGcgcguucguuggugUGCUGcagcugCAgguugagcagcGCAGCGUCACCCu -3'
miRNA:   3'- -GGACCU--------------ACGGCa-----GU-----------UGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 35283 0.68 0.594834
Target:  5'- uCCgGGgcGCCGaacaUgacguccagcggccCAACGAUGCCGCCCu -3'
miRNA:   3'- -GGaCCuaCGGC----A--------------GUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 5540 0.67 0.609429
Target:  5'- aCCUGGcucgaGCgGUCGaccugagcccgGCGGCGUCGCUCa -3'
miRNA:   3'- -GGACCua---CGgCAGU-----------UGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 16848 0.67 0.616179
Target:  5'- uCCUGGAcaaguucgguaUGCCcacggcgGUCGGCcgcuaugacgacaaGAcCGCCACCCc -3'
miRNA:   3'- -GGACCU-----------ACGG-------CAGUUG--------------UU-GCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 30339 0.67 0.631944
Target:  5'- cCCUGGccuggGCgG-CAcCGACGCCAUCUa -3'
miRNA:   3'- -GGACCua---CGgCaGUuGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 37957 0.67 0.643207
Target:  5'- gCUGGGUGCCGgCggUgagguAgGCCguGCCCg -3'
miRNA:   3'- gGACCUACGGCaGuuGu----UgCGG--UGGG- -5'
30412 3' -54.2 NC_006548.1 + 16494 0.67 0.651085
Target:  5'- aCCUGGAgcagcaGCUG-CAGCGcgugggcugggaccGCGUCACCa -3'
miRNA:   3'- -GGACCUa-----CGGCaGUUGU--------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 19072 0.67 0.654459
Target:  5'- cCCUGGcgGCCGggAAau-CGCCAguUCCg -3'
miRNA:   3'- -GGACCuaCGGCagUUguuGCGGU--GGG- -5'
30412 3' -54.2 NC_006548.1 + 14455 0.67 0.654459
Target:  5'- gCUGGcacgaauUGCCGcCAGC--CGCCGCuCCa -3'
miRNA:   3'- gGACCu------ACGGCaGUUGuuGCGGUG-GG- -5'
30412 3' -54.2 NC_006548.1 + 5350 0.66 0.665689
Target:  5'- gCCUGGc-GCaCGUCAuCAaacugcGCGCCaugGCCCa -3'
miRNA:   3'- -GGACCuaCG-GCAGUuGU------UGCGG---UGGG- -5'
30412 3' -54.2 NC_006548.1 + 18062 0.66 0.665689
Target:  5'- uUCUGGAUGUacaaccaCAGCGAUGCCGucgaacaucCCCg -3'
miRNA:   3'- -GGACCUACGgca----GUUGUUGCGGU---------GGG- -5'
30412 3' -54.2 NC_006548.1 + 15545 0.66 0.676887
Target:  5'- gCUGGAaagacuccUCGUCAGCAcaGC-CCGCCCg -3'
miRNA:   3'- gGACCUac------GGCAGUUGU--UGcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 17851 0.66 0.676887
Target:  5'- --aGGAccgGUCGUUAGCcGCGCCACg- -3'
miRNA:   3'- ggaCCUa--CGGCAGUUGuUGCGGUGgg -5'
30412 3' -54.2 NC_006548.1 + 13468 0.66 0.676887
Target:  5'- gCCaGGAUGuCCGcCGGaguGACGCCGCUUu -3'
miRNA:   3'- -GGaCCUAC-GGCaGUUg--UUGCGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.