miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30418 5' -54.8 NC_006548.1 + 34911 0.69 0.463316
Target:  5'- cGCAcCGGAuACGCAGUaacccggccggcUGGUcAGCCCCg -3'
miRNA:   3'- cCGU-GCCU-UGUGUCGa-----------ACCA-UCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 18453 0.7 0.387092
Target:  5'- cGGUuCGGGugGCAGCggcgUGGUcuucugcagGGCgCCCu -3'
miRNA:   3'- -CCGuGCCUugUGUCGa---ACCA---------UCG-GGG- -5'
30418 5' -54.8 NC_006548.1 + 14406 0.71 0.334361
Target:  5'- uGCACGGcuGCACGGCUgGGcAGCUCg -3'
miRNA:   3'- cCGUGCCu-UGUGUCGAaCCaUCGGGg -5'
30418 5' -54.8 NC_006548.1 + 20712 0.72 0.294582
Target:  5'- uGGCGCuccuGGAGCGCAGCUucgucaggcaUGGUcguGUCCUg -3'
miRNA:   3'- -CCGUG----CCUUGUGUCGA----------ACCAu--CGGGG- -5'
30418 5' -54.8 NC_006548.1 + 35015 0.74 0.22023
Target:  5'- aGGCGCaGGGC-CAGCUcgucaccGGUAGCCUCa -3'
miRNA:   3'- -CCGUGcCUUGuGUCGAa------CCAUCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 14483 0.81 0.081237
Target:  5'- gGGCACGGAu--CAGCUUGGccGCCUCg -3'
miRNA:   3'- -CCGUGCCUuguGUCGAACCauCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 5817 1.14 0.000333
Target:  5'- cGGCACGGAACACAGCUUGGUAGCCCCc -3'
miRNA:   3'- -CCGUGCCUUGUGUCGAACCAUCGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.