miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30418 5' -54.8 NC_006548.1 + 21852 0.67 0.584569
Target:  5'- aGGCcCGGAcCuccaAGC-UGGUcuucAGCCCCa -3'
miRNA:   3'- -CCGuGCCUuGug--UCGaACCA----UCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 4303 0.67 0.551109
Target:  5'- aGCACGGuGCAgAGCggcagaugGGUAGCUa- -3'
miRNA:   3'- cCGUGCCuUGUgUCGaa------CCAUCGGgg -5'
30418 5' -54.8 NC_006548.1 + 28035 0.68 0.540079
Target:  5'- cGGCGCGGcccuGCAggaGGCcuaUGGUccAGCCUCa -3'
miRNA:   3'- -CCGUGCCu---UGUg--UCGa--ACCA--UCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 30515 0.69 0.475734
Target:  5'- uGGCAUGGAAC-CAGCcgau--GCCCUa -3'
miRNA:   3'- -CCGUGCCUUGuGUCGaaccauCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 30718 0.7 0.42516
Target:  5'- cGGCAcCGGGGCAuCAGC-----AGCCCCu -3'
miRNA:   3'- -CCGU-GCCUUGU-GUCGaaccaUCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 12944 0.72 0.310036
Target:  5'- aGCGCGGugcugugcGGCGCAGCcgUGGUgaccacGGCUCCg -3'
miRNA:   3'- cCGUGCC--------UUGUGUCGa-ACCA------UCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 4677 0.74 0.245228
Target:  5'- uGCGCGGGGaa-AGCUUGGU-GCCCa -3'
miRNA:   3'- cCGUGCCUUgugUCGAACCAuCGGGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.