Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30420 | 5' | -58.7 | NC_006548.1 | + | 29155 | 0.71 | 0.196748 |
|
Target: 5'- gGCCUGCUGGgCGGC-CUggauacucgacuccuGCCGAGAc -3' miRNA: 3'- gCGGACGACCgGUUGuGG---------------UGGCUCUu -5' |
|||||||
| 30420 | 5' | -58.7 | NC_006548.1 | + | 28087 | 0.71 | 0.194611 |
|
Target: 5'- gGCCUGCaGGCCGAacucaACCGCCuGcAGAAc -3' miRNA: 3'- gCGGACGaCCGGUUg----UGGUGG-C-UCUU- -5' |
|||||||
| 30420 | 5' | -58.7 | NC_006548.1 | + | 2479 | 0.71 | 0.184226 |
|
Target: 5'- gCGaCgUGCUGGCCAGCAUgGCUGGcGAAg -3' miRNA: 3'- -GC-GgACGACCGGUUGUGgUGGCU-CUU- -5' |
|||||||
| 30420 | 5' | -58.7 | NC_006548.1 | + | 33033 | 0.72 | 0.164917 |
|
Target: 5'- aGCCgGCcGGCCAGCGCCGCUGcaccGGGc -3' miRNA: 3'- gCGGaCGaCCGGUUGUGGUGGC----UCUu -5' |
|||||||
| 30420 | 5' | -58.7 | NC_006548.1 | + | 23122 | 0.72 | 0.164917 |
|
Target: 5'- uGCCggaGCUGGCCgAACGuCCugguGCCGAGGAg -3' miRNA: 3'- gCGGa--CGACCGG-UUGU-GG----UGGCUCUU- -5' |
|||||||
| 30420 | 5' | -58.7 | NC_006548.1 | + | 25867 | 0.73 | 0.135466 |
|
Target: 5'- cCGCCUGCUGGCCcGCGCgGgCCGuuacGAc -3' miRNA: 3'- -GCGGACGACCGGuUGUGgU-GGCu---CUu -5' |
|||||||
| 30420 | 5' | -58.7 | NC_006548.1 | + | 12587 | 0.78 | 0.060068 |
|
Target: 5'- gGCCaGCUGGUCGGCGCCggauGCCGAGGc -3' miRNA: 3'- gCGGaCGACCGGUUGUGG----UGGCUCUu -5' |
|||||||
| 30420 | 5' | -58.7 | NC_006548.1 | + | 7755 | 1.05 | 0.000416 |
|
Target: 5'- gCGCCUGCUGGCCAACACCACCGAGAAc -3' miRNA: 3'- -GCGGACGACCGGUUGUGGUGGCUCUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home