miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30428 5' -48.7 NC_006548.1 + 37332 0.72 0.611996
Target:  5'- aAGGGGcgcgucgccacGCugCCGAcUAGCGGCCAGGCc -3'
miRNA:   3'- -UCCUU-----------CGugGGUUaGUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 36683 0.67 0.880522
Target:  5'- cGGcgcuGGCACCguAUCGACGcauccccGCgCGAGCa -3'
miRNA:   3'- uCCu---UCGUGGguUAGUUGU-------UG-GUUCG- -5'
30428 5' -48.7 NC_006548.1 + 36610 0.68 0.836701
Target:  5'- cGGAAGaucucgucaUCGAUCAucGCGGCCGAGCc -3'
miRNA:   3'- uCCUUCgug------GGUUAGU--UGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 35512 0.67 0.872985
Target:  5'- gAGcGggGUucaucgccuucACCUggUCGcCGGCCAGGCu -3'
miRNA:   3'- -UC-CuuCG-----------UGGGuuAGUuGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 34995 0.72 0.600084
Target:  5'- cGGAGGCGagCAAUgGGCGGCCGuAGCa -3'
miRNA:   3'- uCCUUCGUggGUUAgUUGUUGGU-UCG- -5'
30428 5' -48.7 NC_006548.1 + 34445 0.71 0.683467
Target:  5'- cAGcGAGGUgccGCCCA--CAAgGACCAGGCg -3'
miRNA:   3'- -UC-CUUCG---UGGGUuaGUUgUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 34037 0.69 0.806797
Target:  5'- uGGA---GCCU--UCGACGGCCGAGCg -3'
miRNA:   3'- uCCUucgUGGGuuAGUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 33838 0.66 0.916497
Target:  5'- cGGAAGUcguacaagcuaaucGCCUGgccAUCGGCGACCGAccGCu -3'
miRNA:   3'- uCCUUCG--------------UGGGU---UAGUUGUUGGUU--CG- -5'
30428 5' -48.7 NC_006548.1 + 33645 0.75 0.461403
Target:  5'- cGGAcaacGGUGCCCAgcgcgcuGUCGAUcGCCAAGCg -3'
miRNA:   3'- uCCU----UCGUGGGU-------UAGUUGuUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 33469 0.68 0.845244
Target:  5'- gAGGAcggagcuggucgcAGCACUguGUCGACcagcACCAGGUc -3'
miRNA:   3'- -UCCU-------------UCGUGGguUAGUUGu---UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 33311 0.67 0.864331
Target:  5'- cGGGAAGCcaacccccGCCUggUCGGCAAauugcGGCa -3'
miRNA:   3'- -UCCUUCG--------UGGGuuAGUUGUUggu--UCG- -5'
30428 5' -48.7 NC_006548.1 + 33113 0.66 0.924973
Target:  5'- cGGAGGUcauGCCC--UCGACAacauACCGGGg -3'
miRNA:   3'- uCCUUCG---UGGGuuAGUUGU----UGGUUCg -5'
30428 5' -48.7 NC_006548.1 + 33037 0.66 0.917837
Target:  5'- cGGGAGcCGgCCGGcCAGCGccgcugcACCGGGCg -3'
miRNA:   3'- uCCUUC-GUgGGUUaGUUGU-------UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 32960 0.66 0.918502
Target:  5'- uGGc-GCGCCCGGUgCAGCGGCgCuGGCc -3'
miRNA:   3'- uCCuuCGUGGGUUA-GUUGUUG-GuUCG- -5'
30428 5' -48.7 NC_006548.1 + 31263 0.74 0.518189
Target:  5'- cGGuuGCcgaaGCCCGGUCGGugaccCAGCCGAGCg -3'
miRNA:   3'- uCCuuCG----UGGGUUAGUU-----GUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 31022 0.67 0.889403
Target:  5'- -cGAAGuCGCCCAGguuUCGGCGACCcucGGUu -3'
miRNA:   3'- ucCUUC-GUGGGUU---AGUUGUUGGu--UCG- -5'
30428 5' -48.7 NC_006548.1 + 30711 0.69 0.774954
Target:  5'- uAGcGAccGGCACCgGggcAUCAGCAGCCccuacGAGCg -3'
miRNA:   3'- -UC-CU--UCGUGGgU---UAGUUGUUGG-----UUCG- -5'
30428 5' -48.7 NC_006548.1 + 29858 0.67 0.864331
Target:  5'- cGGAugauGacuuCCCGAUCGGagAGCCAGGCa -3'
miRNA:   3'- uCCUu---Cgu--GGGUUAGUUg-UUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 29805 0.68 0.836701
Target:  5'- cGGGAAGUcaucAUCCGggCGGCGgccgcaacccaGCCGGGCa -3'
miRNA:   3'- -UCCUUCG----UGGGUuaGUUGU-----------UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 29602 0.7 0.763974
Target:  5'- aGGGAGccGCAgCCAGUCuuGCGGCCGcgaaugGGCu -3'
miRNA:   3'- -UCCUU--CGUgGGUUAGu-UGUUGGU------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.