miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30430 5' -56.1 NC_006548.1 + 12415 0.66 0.614378
Target:  5'- -gAUUGAACGgc-UGGUUGGUGCCGAg -3'
miRNA:   3'- cgUGGCUUGCaucGCUAGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 9549 0.66 0.603293
Target:  5'- -gACCGAAcCGUuGC-AUCaccaGGCGCCGAa -3'
miRNA:   3'- cgUGGCUU-GCAuCGcUAG----CCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 8158 0.66 0.599972
Target:  5'- gGCACUGugcuccgucAugGUGGCGAUguucugguugauagCGGCGCUa- -3'
miRNA:   3'- -CGUGGC---------UugCAUCGCUA--------------GCCGCGGcu -5'
30430 5' -56.1 NC_006548.1 + 17465 0.66 0.592234
Target:  5'- gGCGaacUCGGugGaaGGCG-UCGGCGCCGu -3'
miRNA:   3'- -CGU---GGCUugCa-UCGCuAGCCGCGGCu -5'
30430 5' -56.1 NC_006548.1 + 32558 0.66 0.592234
Target:  5'- -aACCGGaucaccGCGUGGCcGUUuGCGCCGGa -3'
miRNA:   3'- cgUGGCU------UGCAUCGcUAGcCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 5583 0.66 0.581209
Target:  5'- cGgGCCGGcuuGCGcaacugguUGGCGAU-GGCGUCGAg -3'
miRNA:   3'- -CgUGGCU---UGC--------AUCGCUAgCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 17887 0.66 0.570227
Target:  5'- cCACCaGGuCGgcGCGAUuugcccCGGCGCUGAc -3'
miRNA:   3'- cGUGG-CUuGCauCGCUA------GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 20623 0.67 0.559296
Target:  5'- aGCACCGucgGAUGgGGUGA-CGGUGCCc- -3'
miRNA:   3'- -CGUGGC---UUGCaUCGCUaGCCGCGGcu -5'
30430 5' -56.1 NC_006548.1 + 22580 0.67 0.548425
Target:  5'- uGCGCCG---GUAGUGGUUGGUGCgGc -3'
miRNA:   3'- -CGUGGCuugCAUCGCUAGCCGCGgCu -5'
30430 5' -56.1 NC_006548.1 + 35217 0.67 0.548425
Target:  5'- cCGCUGGACGUcaUGuUCGGCGCCc- -3'
miRNA:   3'- cGUGGCUUGCAucGCuAGCCGCGGcu -5'
30430 5' -56.1 NC_006548.1 + 36676 0.67 0.548425
Target:  5'- gGCACCGuaucGACGcauccccgcGCGAgcaccgCGGUGCCGGc -3'
miRNA:   3'- -CGUGGC----UUGCau-------CGCUa-----GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 36292 0.67 0.537621
Target:  5'- gGCACUGAGCGauGCaGAUCuGGCGCa-- -3'
miRNA:   3'- -CGUGGCUUGCauCG-CUAG-CCGCGgcu -5'
30430 5' -56.1 NC_006548.1 + 5044 0.67 0.526891
Target:  5'- uGCACCaGAucGCGgcgcagGGUGGauuuacCGGCGCCGGa -3'
miRNA:   3'- -CGUGG-CU--UGCa-----UCGCUa-----GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 3635 0.67 0.516243
Target:  5'- gGCGCUcAGCGUcaUGGUCGGgGCUGAa -3'
miRNA:   3'- -CGUGGcUUGCAucGCUAGCCgCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 13273 0.67 0.513065
Target:  5'- cGCgGCUGggUGc-GCGAcuucaacaccgcccUCGGCGCCGGu -3'
miRNA:   3'- -CG-UGGCuuGCauCGCU--------------AGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 9466 0.67 0.505682
Target:  5'- -aGCCGGucgAUGaGGCGuUCGGCGCCu- -3'
miRNA:   3'- cgUGGCU---UGCaUCGCuAGCCGCGGcu -5'
30430 5' -56.1 NC_006548.1 + 37847 0.67 0.505682
Target:  5'- uGCuCCGAACGUGGC---UGGUGCUGc -3'
miRNA:   3'- -CGuGGCUUGCAUCGcuaGCCGCGGCu -5'
30430 5' -56.1 NC_006548.1 + 12063 0.68 0.484847
Target:  5'- gGCGCCGAGCau-GCugGGUCGguGCGCUGAu -3'
miRNA:   3'- -CGUGGCUUGcauCG--CUAGC--CGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 19110 0.68 0.484847
Target:  5'- aGCACUGGACGUGcucaacGCGGgcagCGcaGCGCUGGg -3'
miRNA:   3'- -CGUGGCUUGCAU------CGCUa---GC--CGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 11756 0.68 0.484847
Target:  5'- -aGCUGGucaugcGCGgcGCGcggCGGCGCCGGg -3'
miRNA:   3'- cgUGGCU------UGCauCGCua-GCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.