miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30430 5' -56.1 NC_006548.1 + 12273 1.11 0.000473
Target:  5'- aGCACCGAACGUAGCGAUCGGCGCCGAc -3'
miRNA:   3'- -CGUGGCUUGCAUCGCUAGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 17887 0.66 0.570227
Target:  5'- cCACCaGGuCGgcGCGAUuugcccCGGCGCUGAc -3'
miRNA:   3'- cGUGG-CUuGCauCGCUA------GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 9549 0.66 0.603293
Target:  5'- -gACCGAAcCGUuGC-AUCaccaGGCGCCGAa -3'
miRNA:   3'- cgUGGCUU-GCAuCGcUAG----CCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12415 0.66 0.614378
Target:  5'- -gAUUGAACGgc-UGGUUGGUGCCGAg -3'
miRNA:   3'- cgUGGCUUGCaucGCUAGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 28079 0.73 0.247852
Target:  5'- cGCGCCGAAcCGcGGCaGAaacUCGGCcGCCGGa -3'
miRNA:   3'- -CGUGGCUU-GCaUCG-CU---AGCCG-CGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12609 0.72 0.289948
Target:  5'- aGCGCUcGACGgaaucgaaccaggccAGCuGGUCGGCGCCGGa -3'
miRNA:   3'- -CGUGGcUUGCa--------------UCG-CUAGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12126 0.72 0.296613
Target:  5'- cGCACCG-ACccAGCaugcUCGGCGCCGGa -3'
miRNA:   3'- -CGUGGCuUGcaUCGcu--AGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 5140 0.71 0.319688
Target:  5'- cUugCGGugGUgGGUGAgucCGGCGCCGGu -3'
miRNA:   3'- cGugGCUugCA-UCGCUa--GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 32482 0.7 0.387643
Target:  5'- aGCGCCgcGAACGgcaacggcGGCGA-CGGCuGCCGGc -3'
miRNA:   3'- -CGUGG--CUUGCa-------UCGCUaGCCG-CGGCU- -5'
30430 5' -56.1 NC_006548.1 + 20623 0.67 0.559296
Target:  5'- aGCACCGucgGAUGgGGUGA-CGGUGCCc- -3'
miRNA:   3'- -CGUGGC---UUGCaUCGCUaGCCGCGGcu -5'
30430 5' -56.1 NC_006548.1 + 11756 0.68 0.484847
Target:  5'- -aGCUGGucaugcGCGgcGCGcggCGGCGCCGGg -3'
miRNA:   3'- cgUGGCU------UGCauCGCua-GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 3683 0.7 0.378646
Target:  5'- aCGCUGAGCGccgaGGCGGUgaacUGGCGCUGGc -3'
miRNA:   3'- cGUGGCUUGCa---UCGCUA----GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 6688 0.75 0.16564
Target:  5'- gGCGCCGAGaGUGGCGAgaacuucugcaCGGUGCUGAu -3'
miRNA:   3'- -CGUGGCUUgCAUCGCUa----------GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 22580 0.67 0.548425
Target:  5'- uGCGCCG---GUAGUGGUUGGUGCgGc -3'
miRNA:   3'- -CGUGGCuugCAUCGCUAGCCGCGgCu -5'
30430 5' -56.1 NC_006548.1 + 34749 0.75 0.174992
Target:  5'- uCGCCGAagaucACGUAGUGGcCGGUGCCGu -3'
miRNA:   3'- cGUGGCU-----UGCAUCGCUaGCCGCGGCu -5'
30430 5' -56.1 NC_006548.1 + 13391 0.7 0.361077
Target:  5'- aGCGCCGGcggaaucggcgcGCGcuccugcGGCGGgcaaacCGGCGCCGAg -3'
miRNA:   3'- -CGUGGCU------------UGCa------UCGCUa-----GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 36676 0.67 0.548425
Target:  5'- gGCACCGuaucGACGcauccccgcGCGAgcaccgCGGUGCCGGc -3'
miRNA:   3'- -CGUGGC----UUGCau-------CGCUa-----GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 17465 0.66 0.592234
Target:  5'- gGCGaacUCGGugGaaGGCG-UCGGCGCCGu -3'
miRNA:   3'- -CGU---GGCUugCa-UCGCuAGCCGCGGCu -5'
30430 5' -56.1 NC_006548.1 + 21310 0.73 0.247852
Target:  5'- cGCACCGucgGCGgcGgGAauuUCGGUGCUGAu -3'
miRNA:   3'- -CGUGGCu--UGCauCgCU---AGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 28602 0.72 0.296613
Target:  5'- aGCGCCGcGACcUGGC---CGGCGCCGAg -3'
miRNA:   3'- -CGUGGC-UUGcAUCGcuaGCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.