miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30431 3' -63.7 NC_006548.1 + 4480 0.66 0.210349
Target:  5'- gAGCUggcucgucuugucGCgGCCGCUgGUGCucAGGCGCUc -3'
miRNA:   3'- -UCGAa------------CGgCGGCGGgCGCG--UCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 20175 0.66 0.229623
Target:  5'- -uCUUGCgguuCGCCGCCUcgGCGaacuccGGCACCa -3'
miRNA:   3'- ucGAACG----GCGGCGGG--CGCgu----CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 32876 0.66 0.223804
Target:  5'- cGUUUGUgCGCCGgCCGCGguGaCGCUu -3'
miRNA:   3'- uCGAACG-GCGGCgGGCGCguCcGUGG- -5'
30431 3' -63.7 NC_006548.1 + 36700 0.66 0.223804
Target:  5'- ----aGCgCGCCgGCCUcaugcgGCGCuGGCACCg -3'
miRNA:   3'- ucgaaCG-GCGG-CGGG------CGCGuCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 23221 0.66 0.217549
Target:  5'- aGGCcgaggUGuaGCCGCuuGCGaCAacuccucGGCACCa -3'
miRNA:   3'- -UCGa----ACggCGGCGggCGC-GU-------CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 28129 0.66 0.212542
Target:  5'- aGGCc-GCCaGCCGCCUGCuGUgAGGCuggACCa -3'
miRNA:   3'- -UCGaaCGG-CGGCGGGCG-CG-UCCG---UGG- -5'
30431 3' -63.7 NC_006548.1 + 21089 0.66 0.210895
Target:  5'- cAGCcUGCCGCUGUucuuccugauagcuCUGCGCucGCGCUg -3'
miRNA:   3'- -UCGaACGGCGGCG--------------GGCGCGucCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 1199 0.66 0.241644
Target:  5'- gAGCcgGCUGCaaaGCCgGUaCGGGCGCUg -3'
miRNA:   3'- -UCGaaCGGCGg--CGGgCGcGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 14930 0.66 0.241644
Target:  5'- gAGCgcacUGCUGCCgaGUCCGCGCgaguggaucaauGGGUagcaGCCg -3'
miRNA:   3'- -UCGa---ACGGCGG--CGGGCGCG------------UCCG----UGG- -5'
30431 3' -63.7 NC_006548.1 + 32414 0.66 0.235569
Target:  5'- cAGCcgucGCCGCCGUugCCGUucGCGGcGCugCa -3'
miRNA:   3'- -UCGaa--CGGCGGCG--GGCG--CGUC-CGugG- -5'
30431 3' -63.7 NC_006548.1 + 22700 0.66 0.218111
Target:  5'- cAGCUcGUCGCUGCCauucagGCGCAGaaggugcucGUGCCg -3'
miRNA:   3'- -UCGAaCGGCGGCGGg-----CGCGUC---------CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 7188 0.66 0.223229
Target:  5'- cAGCUUGCgGUacagcgaUGCCaGCGaCAGGC-CCa -3'
miRNA:   3'- -UCGAACGgCG-------GCGGgCGC-GUCCGuGG- -5'
30431 3' -63.7 NC_006548.1 + 35729 0.66 0.222083
Target:  5'- cGCga--CGCUGCCCGUauucgaugaggacaGCGGGCugCu -3'
miRNA:   3'- uCGaacgGCGGCGGGCG--------------CGUCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 550 0.66 0.222655
Target:  5'- cGC-UGCCGCCGCCauccuuucggcaGCuguucCAGGCcgGCCg -3'
miRNA:   3'- uCGaACGGCGGCGGg-----------CGc----GUCCG--UGG- -5'
30431 3' -63.7 NC_006548.1 + 30323 0.66 0.235569
Target:  5'- aGGUgacucUGCgCGCCccugGCCUGgGC-GGCACCg -3'
miRNA:   3'- -UCGa----ACG-GCGG----CGGGCgCGuCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 22537 0.66 0.235569
Target:  5'- cGGC--GCacaGCCGCCgGCGgAGGagaGCCu -3'
miRNA:   3'- -UCGaaCGg--CGGCGGgCGCgUCCg--UGG- -5'
30431 3' -63.7 NC_006548.1 + 18079 0.66 0.235569
Target:  5'- cAGCgaUGCCGUCGaacaucCCCGCGaacuGCACCu -3'
miRNA:   3'- -UCGa-ACGGCGGC------GGGCGCguc-CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 2334 0.66 0.241031
Target:  5'- cGCUucguuccUGuUCGUCGgCUGCGCGgcGGCGCCg -3'
miRNA:   3'- uCGA-------AC-GGCGGCgGGCGCGU--CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 4732 0.67 0.181646
Target:  5'- cAGCUUGgugaaGCCGUCCuccaacucaCGCAGGCGCUu -3'
miRNA:   3'- -UCGAACgg---CGGCGGGc--------GCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 36340 0.67 0.176901
Target:  5'- cGCUcagUGCCGCCGCgagaucaCG-GUAcGGCGCCu -3'
miRNA:   3'- uCGA---ACGGCGGCGg------GCgCGU-CCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.