miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30431 3' -63.7 NC_006548.1 + 12802 0.67 0.207096
Target:  5'- gAGCUguauUGCuCGCCaGUgCCGCGCGagcGGCGCg -3'
miRNA:   3'- -UCGA----ACG-GCGG-CG-GGCGCGU---CCGUGg -5'
30431 3' -63.7 NC_006548.1 + 33141 0.68 0.154794
Target:  5'- gGGCUgGCCGgUGCUCGgGCAgcGGC-CCg -3'
miRNA:   3'- -UCGAaCGGCgGCGGGCgCGU--CCGuGG- -5'
30431 3' -63.7 NC_006548.1 + 1118 0.68 0.16332
Target:  5'- gAGCgaGCCugGCCGUCUGCGCGGccagcaaCGCCu -3'
miRNA:   3'- -UCGaaCGG--CGGCGGGCGCGUCc------GUGG- -5'
30431 3' -63.7 NC_006548.1 + 4732 0.67 0.181646
Target:  5'- cAGCUUGgugaaGCCGUCCuccaacucaCGCAGGCGCUu -3'
miRNA:   3'- -UCGAACgg---CGGCGGGc--------GCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 11689 0.67 0.181646
Target:  5'- cGGC--GCCGCCGCgcgCCGCGCAugaccagcuGGaCGCUg -3'
miRNA:   3'- -UCGaaCGGCGGCG---GGCGCGU---------CC-GUGG- -5'
30431 3' -63.7 NC_006548.1 + 18704 0.67 0.195538
Target:  5'- gAGCUagcgacccUGCCGCagauccuCGCCCaGcCGCAGGCcgugcugcucgacGCCa -3'
miRNA:   3'- -UCGA--------ACGGCG-------GCGGG-C-GCGUCCG-------------UGG- -5'
30431 3' -63.7 NC_006548.1 + 18966 0.67 0.196565
Target:  5'- ----cGCCaCCuccaCCGUGCAGGCGCCa -3'
miRNA:   3'- ucgaaCGGcGGcg--GGCGCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 27931 0.67 0.201771
Target:  5'- cGGCgcguucucGCUGCCGCCaagGCccuGGGCACCa -3'
miRNA:   3'- -UCGaa------CGGCGGCGGg--CGcg-UCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 33571 0.67 0.201771
Target:  5'- cGCUUGgCGaUCGaCagCGCGCuGGGCACCg -3'
miRNA:   3'- uCGAACgGC-GGC-Gg-GCGCG-UCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 3783 0.68 0.154794
Target:  5'- uGCUgaGCgCGCCGCUCcUGCAGGUagACCg -3'
miRNA:   3'- uCGAa-CG-GCGGCGGGcGCGUCCG--UGG- -5'
30431 3' -63.7 NC_006548.1 + 37070 0.68 0.154794
Target:  5'- uAGCgcauggGCUGCUGCCgGUGCuGcGCAUCg -3'
miRNA:   3'- -UCGaa----CGGCGGCGGgCGCGuC-CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 25256 0.68 0.154378
Target:  5'- aGGCUUGCCGCCGCUgGauCGgaucaucGGCGuCCu -3'
miRNA:   3'- -UCGAACGGCGGCGGgCgcGU-------CCGU-GG- -5'
30431 3' -63.7 NC_006548.1 + 843 0.71 0.102744
Target:  5'- cGGCUUGCCgGCgGCUCGCuuGCuGGGCugUg -3'
miRNA:   3'- -UCGAACGG-CGgCGGGCG--CG-UCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 13311 0.7 0.111628
Target:  5'- cGGUUUGcCCGCCGCaggagCGCGCGccgauuccgccGGCGCUc -3'
miRNA:   3'- -UCGAAC-GGCGGCGg----GCGCGU-----------CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 14641 0.7 0.111628
Target:  5'- aGGCagagGCCGaggaaCGCgCGCGcCAGGCGCUg -3'
miRNA:   3'- -UCGaa--CGGCg----GCGgGCGC-GUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 20789 0.7 0.117945
Target:  5'- aGGCcgGCCGCCuGCugCCGCGCcagaAGGCuCCg -3'
miRNA:   3'- -UCGaaCGGCGG-CG--GGCGCG----UCCGuGG- -5'
30431 3' -63.7 NC_006548.1 + 29645 0.69 0.131587
Target:  5'- uGCUggUGCCGCUGCCagcggugccggUGCGgCAGGUGCg -3'
miRNA:   3'- uCGA--ACGGCGGCGG-----------GCGC-GUCCGUGg -5'
30431 3' -63.7 NC_006548.1 + 25855 0.69 0.14276
Target:  5'- uGGCggaugucaCCGCCugcugGCCCGCGCGGGC-Cg -3'
miRNA:   3'- -UCGaac-----GGCGG-----CGGGCGCGUCCGuGg -5'
30431 3' -63.7 NC_006548.1 + 23952 0.69 0.146673
Target:  5'- cGCUggacaCCGCCcgGCCUG-GCAGGCGCUc -3'
miRNA:   3'- uCGAac---GGCGG--CGGGCgCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 13546 0.68 0.150278
Target:  5'- ---cUGCUGCUgaccuuccucgguGCCUGCGCGGGCGgCg -3'
miRNA:   3'- ucgaACGGCGG-------------CGGGCGCGUCCGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.