miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30431 3' -63.7 NC_006548.1 + 13627 1.11 0.00006
Target:  5'- cAGCUUGCCGCCGCCCGCGCAGGCACCg -3'
miRNA:   3'- -UCGAACGGCGGCGGGCGCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 35941 0.77 0.032125
Target:  5'- ----cGCCGCCGgCCGCGCGGaucGCGCCg -3'
miRNA:   3'- ucgaaCGGCGGCgGGCGCGUC---CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 25427 0.76 0.038173
Target:  5'- -cCUUGCCagGCCGUgCGCGCAGGC-CCu -3'
miRNA:   3'- ucGAACGG--CGGCGgGCGCGUCCGuGG- -5'
30431 3' -63.7 NC_006548.1 + 20528 0.72 0.075563
Target:  5'- cAGCcucUGCCGCCGCugcggaagagCCGCa-GGGCACCg -3'
miRNA:   3'- -UCGa--ACGGCGGCG----------GGCGcgUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 18273 0.72 0.08694
Target:  5'- cAGCgaUGCCaGCuCGUccuCCGCGUAGGCGCUg -3'
miRNA:   3'- -UCGa-ACGG-CG-GCG---GGCGCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 19397 0.71 0.089403
Target:  5'- cAGCUcGCUGCCGUCCaGCugguagcgcaGCAGGUugCg -3'
miRNA:   3'- -UCGAaCGGCGGCGGG-CG----------CGUCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 843 0.71 0.102744
Target:  5'- cGGCUUGCCgGCgGCUCGCuuGCuGGGCugUg -3'
miRNA:   3'- -UCGAACGG-CGgCGGGCG--CG-UCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 2006 0.7 0.10859
Target:  5'- gGGUaUGCCGCgggcaaGCgCGCGCGGcuGCACCa -3'
miRNA:   3'- -UCGaACGGCGg-----CGgGCGCGUC--CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 30402 0.7 0.10859
Target:  5'- uGGCgucggUGCCGCCcagGCCaggggCGCGCAGaGuCACCu -3'
miRNA:   3'- -UCGa----ACGGCGG---CGG-----GCGCGUC-C-GUGG- -5'
30431 3' -63.7 NC_006548.1 + 13311 0.7 0.111628
Target:  5'- cGGUUUGcCCGCCGCaggagCGCGCGccgauuccgccGGCGCUc -3'
miRNA:   3'- -UCGAAC-GGCGGCGg----GCGCGU-----------CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 14641 0.7 0.111628
Target:  5'- aGGCagagGCCGaggaaCGCgCGCGcCAGGCGCUg -3'
miRNA:   3'- -UCGaa--CGGCg----GCGgGCGC-GUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 20789 0.7 0.117945
Target:  5'- aGGCcgGCCGCCuGCugCCGCGCcagaAGGCuCCg -3'
miRNA:   3'- -UCGaaCGGCGG-CG--GGCGCG----UCCGuGG- -5'
30431 3' -63.7 NC_006548.1 + 15208 0.7 0.121227
Target:  5'- cGCUUGCCG--GCCUGCGCguccGGGUugCu -3'
miRNA:   3'- uCGAACGGCggCGGGCGCG----UCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 14473 0.7 0.121227
Target:  5'- cAGCUUgGCCGCC-UCgGUGCuGGCACg -3'
miRNA:   3'- -UCGAA-CGGCGGcGGgCGCGuCCGUGg -5'
30431 3' -63.7 NC_006548.1 + 12884 0.69 0.128046
Target:  5'- cGGaCUUaCCgcGCCGCUCGCGC-GGCACUg -3'
miRNA:   3'- -UC-GAAcGG--CGGCGGGCGCGuCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 29645 0.69 0.131587
Target:  5'- uGCUggUGCCGCUGCCagcggugccggUGCGgCAGGUGCg -3'
miRNA:   3'- uCGA--ACGGCGGCGG-----------GCGC-GUCCGUGg -5'
30431 3' -63.7 NC_006548.1 + 16717 0.69 0.138943
Target:  5'- aGGCgcagGCCGCCGUCCuggucauaGCGgAaGCGCCg -3'
miRNA:   3'- -UCGaa--CGGCGGCGGG--------CGCgUcCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 25855 0.69 0.14276
Target:  5'- uGGCggaugucaCCGCCugcugGCCCGCGCGGGC-Cg -3'
miRNA:   3'- -UCGaac-----GGCGG-----CGGGCGCGUCCGuGg -5'
30431 3' -63.7 NC_006548.1 + 23952 0.69 0.146673
Target:  5'- cGCUggacaCCGCCcgGCCUG-GCAGGCGCUc -3'
miRNA:   3'- uCGAac---GGCGG--CGGGCgCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 13546 0.68 0.150278
Target:  5'- ---cUGCUGCUgaccuuccucgguGCCUGCGCGGGCGgCg -3'
miRNA:   3'- ucgaACGGCGG-------------CGGGCGCGUCCGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.