miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30431 3' -63.7 NC_006548.1 + 550 0.66 0.222655
Target:  5'- cGC-UGCCGCCGCCauccuuucggcaGCuguucCAGGCcgGCCg -3'
miRNA:   3'- uCGaACGGCGGCGGg-----------CGc----GUCCG--UGG- -5'
30431 3' -63.7 NC_006548.1 + 843 0.71 0.102744
Target:  5'- cGGCUUGCCgGCgGCUCGCuuGCuGGGCugUg -3'
miRNA:   3'- -UCGAACGG-CGgCGGGCG--CG-UCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 1118 0.68 0.16332
Target:  5'- gAGCgaGCCugGCCGUCUGCGCGGccagcaaCGCCu -3'
miRNA:   3'- -UCGaaCGG--CGGCGGGCGCGUCc------GUGG- -5'
30431 3' -63.7 NC_006548.1 + 1199 0.66 0.241644
Target:  5'- gAGCcgGCUGCaaaGCCgGUaCGGGCGCUg -3'
miRNA:   3'- -UCGaaCGGCGg--CGGgCGcGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 1315 0.67 0.176901
Target:  5'- aAGCcUGCCGCacCGCgCGCGCAaGCaaagACCg -3'
miRNA:   3'- -UCGaACGGCG--GCGgGCGCGUcCG----UGG- -5'
30431 3' -63.7 NC_006548.1 + 2006 0.7 0.10859
Target:  5'- gGGUaUGCCGCgggcaaGCgCGCGCGGcuGCACCa -3'
miRNA:   3'- -UCGaACGGCGg-----CGgGCGCGUC--CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 2334 0.66 0.241031
Target:  5'- cGCUucguuccUGuUCGUCGgCUGCGCGgcGGCGCCg -3'
miRNA:   3'- uCGA-------AC-GGCGGCgGGCGCGU--CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 2785 0.67 0.18848
Target:  5'- uGCUUGCCcugcGCCGCCUGCagaucgaugacgaacGUuGGCAgCg -3'
miRNA:   3'- uCGAACGG----CGGCGGGCG---------------CGuCCGUgG- -5'
30431 3' -63.7 NC_006548.1 + 3783 0.68 0.154794
Target:  5'- uGCUgaGCgCGCCGCUCcUGCAGGUagACCg -3'
miRNA:   3'- uCGAa-CG-GCGGCGGGcGCGUCCG--UGG- -5'
30431 3' -63.7 NC_006548.1 + 4480 0.66 0.210349
Target:  5'- gAGCUggcucgucuugucGCgGCCGCUgGUGCucAGGCGCUc -3'
miRNA:   3'- -UCGAa------------CGgCGGCGGgCGCG--UCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 4732 0.67 0.181646
Target:  5'- cAGCUUGgugaaGCCGUCCuccaacucaCGCAGGCGCUu -3'
miRNA:   3'- -UCGAACgg---CGGCGGGc--------GCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 4838 0.67 0.176901
Target:  5'- cAGCcUGCCGaUCGCCaCGCuCAaGCACCu -3'
miRNA:   3'- -UCGaACGGC-GGCGG-GCGcGUcCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 7188 0.66 0.223229
Target:  5'- cAGCUUGCgGUacagcgaUGCCaGCGaCAGGC-CCa -3'
miRNA:   3'- -UCGAACGgCG-------GCGGgCGC-GUCCGuGG- -5'
30431 3' -63.7 NC_006548.1 + 11689 0.67 0.181646
Target:  5'- cGGC--GCCGCCGCgcgCCGCGCAugaccagcuGGaCGCUg -3'
miRNA:   3'- -UCGaaCGGCGGCG---GGCGCGU---------CC-GUGG- -5'
30431 3' -63.7 NC_006548.1 + 12802 0.67 0.207096
Target:  5'- gAGCUguauUGCuCGCCaGUgCCGCGCGagcGGCGCg -3'
miRNA:   3'- -UCGA----ACG-GCGG-CG-GGCGCGU---CCGUGg -5'
30431 3' -63.7 NC_006548.1 + 12884 0.69 0.128046
Target:  5'- cGGaCUUaCCgcGCCGCUCGCGC-GGCACUg -3'
miRNA:   3'- -UC-GAAcGG--CGGCGGGCGCGuCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 13005 0.67 0.176901
Target:  5'- cGGCUgcGCCGCacaGCaCCGCGCucaGCGCg -3'
miRNA:   3'- -UCGAa-CGGCGg--CG-GGCGCGuc-CGUGg -5'
30431 3' -63.7 NC_006548.1 + 13311 0.7 0.111628
Target:  5'- cGGUUUGcCCGCCGCaggagCGCGCGccgauuccgccGGCGCUc -3'
miRNA:   3'- -UCGAAC-GGCGGCGg----GCGCGU-----------CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 13546 0.68 0.150278
Target:  5'- ---cUGCUGCUgaccuuccucgguGCCUGCGCGGGCGgCg -3'
miRNA:   3'- ucgaACGGCGG-------------CGGGCGCGUCCGUgG- -5'
30431 3' -63.7 NC_006548.1 + 13627 1.11 0.00006
Target:  5'- cAGCUUGCCGCCGCCCGCGCAGGCACCg -3'
miRNA:   3'- -UCGAACGGCGGCGGGCGCGUCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.